View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5292_high_10 (Length: 348)
Name: NF5292_high_10
Description: NF5292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5292_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 342
Target Start/End: Complemental strand, 26287257 - 26286921
Alignment:
| Q |
6 |
tttaaactacattatcaaacaactacttatgaaacatactagatagatataacagtacaaccaagcaaccaacataaatgtcattttaaaattaatctaa |
105 |
Q |
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| T |
26287257 |
tttaaactacattatcaaacaactaattatgaaacatactagatagagataacagtacaaccaagcaaccaacataaatgtcattttaaaattaatctta |
26287158 |
T |
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| Q |
106 |
aataaggagggtctatgttatgtagtacgagtcatatatgactaatttaaaagattcaaactgcatatgaattgataataacataattagaaaataataa |
205 |
Q |
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| T |
26287157 |
aataaggagggtatatgttatgtagtgcgagacatatgtgactaaaaaaaaagattcaaactgcatatgaattgataataacataattagaaaataataa |
26287058 |
T |
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| Q |
206 |
tcaaccatactaaaattttaaagacaaaagaataagttgtaatctacttacaaaatataattataatttcactcaatcacaatccgattgtgattaagtg |
305 |
Q |
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| T |
26287057 |
tcaaccatactaaaattttaaagacaaaagagtaagttgtaatctacttacaaaacataattataatttcactcaatcacaatccggttgtgattaagtg |
26286958 |
T |
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| Q |
306 |
gatgacacaacacctacaactgcttcttaacaccaaa |
342 |
Q |
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| T |
26286957 |
gatgacacaacacctacaactgcttcctaacaccaaa |
26286921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 284
Target Start/End: Original strand, 17863840 - 17863988
Alignment:
| Q |
131 |
tacgagtcatatatgactaatttaaaagattcaaactgcatatgaattgataataacataattagaaaataataatcaaccatactaaaattttaaagac |
230 |
Q |
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| T |
17863840 |
tacgagtcatatgtgactccataaaaggattcaaactgcatatgaattgattataacataatta-----taataatcaaccataccaaaatttaaaagac |
17863934 |
T |
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| Q |
231 |
aaaagaataagttgtaatctacttacaaaatataattataatttcactcaatca |
284 |
Q |
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| T |
17863935 |
ataagagtaagttctaatctacttactaaacataattataattttgctcaatca |
17863988 |
T |
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