View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5292_high_2 (Length: 600)
Name: NF5292_high_2
Description: NF5292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5292_high_2 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 337 - 566
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
337 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
436 |
Q |
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| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
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| Q |
437 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
536 |
Q |
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| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
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| Q |
537 |
gtttggtagtttcaactttcaagttgagat |
566 |
Q |
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| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 48 - 281
Target Start/End: Complemental strand, 34277963 - 34277730
Alignment:
| Q |
48 |
ggaaatataagtggtgcgcttccagcagctaaaaaaccacctggtttctcttttaccggcgatgatgcaacatggtggagtgacgacggaagaaattggg |
147 |
Q |
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| T |
34277963 |
ggaaatataattggtgggcttccagcagctaaaaaaccacctggtttctctttcaccggtgatgacgcaacatggtggagtgacgacggaagaaattggg |
34277864 |
T |
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| Q |
148 |
cacgacagtattgcaggattaaactgatgtggccggctatagttgcaggaactctctccttgcttcccatcctctcatatctggttcaatttgtttatca |
247 |
Q |
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| T |
34277863 |
cacgacagtattgcaggattaaactgatgtggccggctatagttgcaggaactctctccttgcttcccttcctctcatatctggttcaatttgtttatca |
34277764 |
T |
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| Q |
248 |
ttattgctactatattttattatatctaagcact |
281 |
Q |
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| T |
34277763 |
ttattgctactatattttattatatataagcact |
34277730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 70 - 274
Target Start/End: Complemental strand, 29148868 - 29148678
Alignment:
| Q |
70 |
cagcagctaaaaaaccacctggtttctcttttaccggcgatgatgcaacatggtggagtgacgacggaagaaattgggcacgacagtattgcaggattaa |
169 |
Q |
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| T |
29148868 |
cagcagctaaacaaccacctggtttctctttcacccgcgatggcacaacatggtggagagacg---gaagaaatcgggaacgaaagtagtg-aggattaa |
29148773 |
T |
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| Q |
170 |
actgatgtggccggctatagttgcaggaactctctccttgcttcccatcctctcatatctggttcaatttgtttatcattattgctactatattttatta |
269 |
Q |
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| T |
29148772 |
actg----------ctatggttgcagggactctctccttctctcccttcctctcattgctggttccatttatttatcattgttgctactattttttattg |
29148683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 29151756 - 29151672
Alignment:
| Q |
190 |
ttgcaggaactctctccttgcttcccatcctctcatatctggttcaatttgtttatcattattgctactatattttattatatct |
274 |
Q |
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| T |
29151756 |
ttgcagggactctctccttctctcccttcctcgcgtatctggttcaatttgtttattattgttgctactattttttattgtatct |
29151672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 25524670 - 25524567
Alignment:
| Q |
156 |
tattgcaggattaaactgatgtggccggctatagttgcaggaactctctccttgcttcccatcctctcatatctggttcaatttgtttatcattattgct |
255 |
Q |
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| T |
25524670 |
tattggaggatgaaactgatgtggtcggatatggttagagggactctctccttctctcgccccctctcatttctggttccatttg-ttatcactattgct |
25524572 |
T |
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| Q |
256 |
actat |
260 |
Q |
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| T |
25524571 |
actat |
25524567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 39444 - 39407
Alignment:
| Q |
74 |
agctaaaaaaccacctggtttctcttttaccggcgatg |
111 |
Q |
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| T |
39444 |
agctaaacaaccacctggtttctctttcaccggcgatg |
39407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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