View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5292_high_3 (Length: 596)
Name: NF5292_high_3
Description: NF5292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5292_high_3 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 34277963 - 34277702
Alignment:
| Q |
1 |
ggaaatataagtggtgcgcttccagcagctaaaaaaccacctggtttctcttttaccggcgatgatgcaacatggtggagtgacgacggaagaaattggg |
100 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
34277963 |
ggaaatataattggtgggcttccagcagctaaaaaaccacctggtttctctttcaccggtgatgacgcaacatggtggagtgacgacggaagaaattggg |
34277864 |
T |
|
| Q |
101 |
cacgacagtattgcaggattaaactgatgtggccggctatagttgcaggaactctctccttgcttcccatcctctcatatctggttcaatttgtttatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34277863 |
cacgacagtattgcaggattaaactgatgtggccggctatagttgcaggaactctctccttgcttcccttcctctcatatctggttcaatttgtttatca |
34277764 |
T |
|
| Q |
201 |
ttattgctactatattttattatatctaagcactactgagtactgatgctacttcactacta |
262 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34277763 |
ttattgctactatattttattatatataagcactactgagtactgatgctacttcactacta |
34277702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 392 - 583
Target Start/End: Complemental strand, 34277701 - 34277510
Alignment:
| Q |
392 |
tattgttctgctctgctgttttgttagcatttttattggtctgctacagtcggactattttttgttgtgattttctgcttagttttgtgagcaagttgtt |
491 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
34277701 |
tattgttctgctctgctgttttgttagcattttttttgttctgctacagtcggactattttttggtgtgattttctgcttagttatgtgagcaagttgtt |
34277602 |
T |
|
| Q |
492 |
gcagtttcgtttaatatcgtgatatcttttcctactactgttggtgaagcnnnnnnngtactgtcatatcagagatttgtattacgcattct |
583 |
Q |
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| T |
34277601 |
gcagtttcgtttaatatcgtgatatcttttcctactactgttggtgaagctttttttgtactgtcatatcagagatttgtattacgcattct |
34277510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 394 - 535
Target Start/End: Complemental strand, 29147478 - 29147338
Alignment:
| Q |
394 |
ttgttctgctctgctgttttgttagcatttttattggtctgctacagtcggactattttttgttgtgattttctgcttagttttgtgagcaagttgttgc |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |||||| ||||||||||||||| |||| |
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| T |
29147478 |
ttgttctgctctgctgttttgttagcatttttattggtctgctactgtcggactat-ttttggtgtgattttttgcttaattttgtgagcaagtttttgc |
29147380 |
T |
|
| Q |
494 |
agtttcgtttaatatcgtgatatcttttcctactactgttgg |
535 |
Q |
| |
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|| || ||||||||||||| | |||||||||||||||||||| |
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| T |
29147379 |
agcttggtttaatatcgtgttgtcttttcctactactgttgg |
29147338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 282 - 382
Target Start/End: Complemental strand, 29147908 - 29147807
Alignment:
| Q |
282 |
gtacggttttccaatatttgggtagtctttgaagtaggaatatctttcgagaatccttaaatcttagtcaaaa-gcgttatttaaacattaaatcagtag |
380 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| | ||||||| | ||||||||||||| |
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| T |
29147908 |
gtacggttttccaaaatttgggtagtctttgaagtaggaatatcttttgagaatccttaaatctaagtcaaaaggatttatttatagattaaatcagtag |
29147809 |
T |
|
| Q |
381 |
ct |
382 |
Q |
| |
|
|| |
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| T |
29147808 |
ct |
29147807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 29148868 - 29148678
Alignment:
| Q |
23 |
cagcagctaaaaaaccacctggtttctcttttaccggcgatgatgcaacatggtggagtgacgacggaagaaattgggcacgacagtattgcaggattaa |
122 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||| |||| |||||||| ||| |||| |||| || |||||||| |
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| T |
29148868 |
cagcagctaaacaaccacctggtttctctttcacccgcgatggcacaacatggtggagagacg---gaagaaatcgggaacgaaagtagtg-aggattaa |
29148773 |
T |
|
| Q |
123 |
actgatgtggccggctatagttgcaggaactctctccttgcttcccatcctctcatatctggttcaatttgtttatcattattgctactatattttatta |
222 |
Q |
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|||| |||| |||||||| ||||||||||| |||| ||||||||| ||||||| |||| ||||||||| |||||||||| ||||||| |
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| T |
29148772 |
actg----------ctatggttgcagggactctctccttctctcccttcctctcattgctggttccatttatttatcattgttgctactattttttattg |
29148683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 29151756 - 29151672
Alignment:
| Q |
143 |
ttgcaggaactctctccttgcttcccatcctctcatatctggttcaatttgtttatcattattgctactatattttattatatct |
227 |
Q |
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||||||| ||||||||||| |||| ||||| | ||||||||||||||||||||| ||| |||||||||| ||||||| ||||| |
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| T |
29151756 |
ttgcagggactctctccttctctcccttcctcgcgtatctggttcaatttgtttattattgttgctactattttttattgtatct |
29151672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 25524670 - 25524567
Alignment:
| Q |
109 |
tattgcaggattaaactgatgtggccggctatagttgcaggaactctctccttgcttcccatcctctcatatctggttcaatttgtttatcattattgct |
208 |
Q |
| |
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||||| ||||| |||||||||||| ||| ||| ||| ||| ||||||||||| || | |||||||| |||||||| ||||| |||||| ||||||| |
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| T |
25524670 |
tattggaggatgaaactgatgtggtcggatatggttagagggactctctccttctctcgccccctctcatttctggttccatttg-ttatcactattgct |
25524572 |
T |
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| Q |
209 |
actat |
213 |
Q |
| |
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||||| |
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| T |
25524571 |
actat |
25524567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 39444 - 39407
Alignment:
| Q |
27 |
agctaaaaaaccacctggtttctcttttaccggcgatg |
64 |
Q |
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||||||| ||||||||||||||||||| |||||||||| |
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| T |
39444 |
agctaaacaaccacctggtttctctttcaccggcgatg |
39407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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