View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5292_high_7 (Length: 367)
Name: NF5292_high_7
Description: NF5292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5292_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 49923409 - 49923533
Alignment:
| Q |
127 |
aggtttgttttcacttgttctgttcgttggatttctttggatcagtgccaagatggaatttgtatttcctgctgtaagtgtttgcctaatttgtattaat |
226 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49923409 |
aggtttgttttctcttgttctgttcgttggatttctttggatcagtgccaagatggaatttgtatttcctgctgtaagtgtttgcctaatttgtattaat |
49923508 |
T |
|
| Q |
227 |
atttcagtttgcttatcgaattggt |
251 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
49923509 |
aattcagtttgcttatcgaattggt |
49923533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 49923284 - 49923343
Alignment:
| Q |
4 |
gttctctctgattctactcgtcttcattatccatgcaatggttggttactgtctttgtta |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49923284 |
gttctctctgattctactcgtcttcattatcgatgcaatggttggttactgtctttgtta |
49923343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 26777663 - 26777576
Alignment:
| Q |
135 |
tttcacttgttctgttcgttggatttctttggatcagtgccaagatggaatttgtatttcctgctgtaagtgtttgcctaatttgtat |
222 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||| | |||||||| |
|
|
| T |
26777663 |
tttcgcttgttctgttggttggacttctttggatcagtgccaagatggaatttgtatctcttactgtaagtgtttgcatgatttgtat |
26777576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 26777791 - 26777732
Alignment:
| Q |
4 |
gttctctctgattctactcgtcttcattatccatgcaatggttggttactgtctttgtta |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26777791 |
gttctctctgattctactcgtcttcattatcgatgcaatggttggttactgtctttgtta |
26777732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University