View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5292_low_1 (Length: 355)
Name: NF5292_low_1
Description: NF5292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5292_low_1 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 76 - 337
Target Start/End: Original strand, 34277702 - 34277963
Alignment:
| Q |
76 |
tagtagtgaagtagcatcagtactcagtagtgcttagatataataaaatatagtagcaataatgataaacaaattgaaccagatatgagaggatgggaag |
175 |
Q |
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| T |
34277702 |
tagtagtgaagtagcatcagtactcagtagtgcttatatataataaaatatagtagcaataatgataaacaaattgaaccagatatgagaggaagggaag |
34277801 |
T |
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| Q |
176 |
caaggagagagttcctgcaactatagccggccacatcagtttaatcctgcaatactgtcgtgcccaatttcttccgtcgtcactccaccatgttgcatca |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34277802 |
caaggagagagttcctgcaactatagccggccacatcagtttaatcctgcaatactgtcgtgcccaatttcttccgtcgtcactccaccatgttgcgtca |
34277901 |
T |
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| Q |
276 |
tcgccggtaaaagagaaaccaggtggttttttagctgctggaagcgcaccacttatatttcc |
337 |
Q |
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| T |
34277902 |
tcaccggtgaaagagaaaccaggtggttttttagctgctggaagcccaccaattatatttcc |
34277963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 111 - 315
Target Start/End: Original strand, 29148678 - 29148868
Alignment:
| Q |
111 |
agatataataaaatatagtagcaataatgataaacaaattgaaccagatatgagaggatgggaagcaaggagagagttcctgcaactatagccggccaca |
210 |
Q |
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| T |
29148678 |
agatacaataaaaaatagtagcaacaatgataaataaatggaaccagcaatgagaggaagggagagaaggagagagtccctgcaaccatag--------- |
29148768 |
T |
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| Q |
211 |
tcagtttaatcctgcaatactgtcgtgcccaatttcttccgtcgtcactccaccatgttgcatcatcgccggtaaaagagaaaccaggtggttttttagc |
310 |
Q |
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| T |
29148769 |
-cagtttaatcct-cactactttcgttcccgatttcttc---cgtctctccaccatgttgtgccatcgcgggtgaaagagaaaccaggtggttgtttagc |
29148863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 29151672 - 29151756
Alignment:
| Q |
111 |
agatataataaaatatagtagcaataatgataaacaaattgaaccagatatgagaggatgggaagcaaggagagagttcctgcaa |
195 |
Q |
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| T |
29151672 |
agatacaataaaaaatagtagcaacaataataaacaaattgaaccagatacgcgaggaagggagagaaggagagagtccctgcaa |
29151756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 29147866 - 29147908
Alignment:
| Q |
14 |
atattcctacttcaaagactacccaaatattggaaaaccgtac |
56 |
Q |
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| T |
29147866 |
atattcctacttcaaagactacccaaattttggaaaaccgtac |
29147908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 25524567 - 25524670
Alignment:
| Q |
125 |
atagtagcaataatgataaacaaattgaaccagatatgagaggatgggaagcaaggagagagttcctgcaactatagccggccacatcagtttaatcctg |
224 |
Q |
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|||||||||||| |||||| ||||| |||||||| |||||||| | || ||||||||||| ||| ||| ||| ||| |||||||||||| ||||| |
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| T |
25524567 |
atagtagcaatagtgataa-caaatggaaccagaaatgagagggggcgagagaaggagagagtccctctaaccatatccgaccacatcagtttcatcctc |
25524665 |
T |
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| Q |
225 |
caata |
229 |
Q |
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||||| |
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| T |
25524666 |
caata |
25524670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 39407 - 39444
Alignment:
| Q |
274 |
catcgccggtaaaagagaaaccaggtggttttttagct |
311 |
Q |
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| T |
39407 |
catcgccggtgaaagagaaaccaggtggttgtttagct |
39444 |
T |
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