View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5293-Insertion-1 (Length: 842)
Name: NF5293-Insertion-1
Description: NF5293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5293-Insertion-1 |
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| [»] scaffold0393 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 5 - 466
Target Start/End: Complemental strand, 30599289 - 30598830
Alignment:
| Q |
5 |
acaacattccatgttggggtatccctctgtatagccccactagcctttaaactaggcgacaagtttttgatgcgcatgcattgtgagaccaactatgttg |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
30599289 |
acaacattccatgttggggtatccctctgtatagccccactagcctttaaactaggtgacaagtttctgatgcgcat-cattgtgagaccaactatgttg |
30599191 |
T |
|
| Q |
105 |
taggacctccatcctcttttgcataacagatttgaatgcatatatatcttcacgctccttgtagccgtcatatgaagggagcagtgttcattttcagtct |
204 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30599190 |
tagaacctccatcctcttttgcataacagatttgaatgcatatatatcttcacgctccttgtagccgtcatatgaagggagcagtgttcattttcagtct |
30599091 |
T |
|
| Q |
205 |
ttgatactcaaatgtaatccaacatctttactatgtttttactttgcatggtggtgtatcattgcacccnnnnnnncttatgtaatcacttattaaaatg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
30599090 |
ttgatactcaaatgtaatccaacatctttactatgtttttactttgcatggtggtgtatcattgcgccc-aaaaaacttatgtaatcacttattaaaatg |
30598992 |
T |
|
| Q |
305 |
aaacagctttatccatcattgtattcttcttttttccttttatttgttcatctttcttcacagtaatatcataaaggccaaattcagatcctctagaata |
404 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30598991 |
aaacagctttatccatcattgtatttttcttttttccttttatttgttcatctttcttcacagtaatatcataaaggccaaattcagatcctctagaata |
30598892 |
T |
|
| Q |
405 |
catgctgcattaatgtgaaccacggtagctcgaccggggagccaagagacattgaagaagtt |
466 |
Q |
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| T |
30598891 |
catgctgcattaatgtgaaccacggtagctcgaccggggagccaagagacattgaagaagtt |
30598830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 489 - 842
Target Start/End: Complemental strand, 30598834 - 30598464
Alignment:
| Q |
489 |
aagttctggaaccctggcaactaatatagctactaacttactaacatttgcatattcaacaaacatgatgcattagacattttaaggaataatgtataaa |
588 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
30598834 |
aagttctggaaccctggcaactaatataactactaacttactaacatttgcatattcaacaaacatgatgcattaggcattttaaggaataatgtatgaa |
30598735 |
T |
|
| Q |
589 |
gttgataaccgccaatgttgaataacaaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatccaaat |
688 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30598734 |
gttgataaccgccaatgttgagtaacaaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatcctaat |
30598635 |
T |
|
| Q |
689 |
tatgcagcaa------------------gtttacactgaaaaacacacgcacacatacaatgtacatttattgtatacttcagcttagagtgataagaat |
770 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30598634 |
tatgcagcaaatcttgcagctaattgatgtttacactgaaaaacacacgcacacatacaatgcacatttattgtatacttcagcttagagtgataagaat |
30598535 |
T |
|
| Q |
771 |
gcttataattaattgaataagaaaaataaaaacacaacaagaaagtgtatggcccttacacagagttgttcc |
842 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
30598534 |
gcttataattaattgaataagaaaaataaaaacacagcaagaaagtgtatgg-ccttacacagagttgttcc |
30598464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 214 - 613
Target Start/End: Complemental strand, 2411352 - 2410958
Alignment:
| Q |
214 |
aaatgtaatccaacatctttactatgtttttactttgcatggtggtgtatcattgcacccnnnnnnncttatgtaatcacttattaaaatgaaacagctt |
313 |
Q |
| |
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|||||||||||||||||||||||||||||| || | ||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||| |
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| T |
2411352 |
aaatgtaatccaacatctttactatgtttt-acactacatggtg---tatcatagcacccaaaaaa-cttatgtaatcacttattaaaatgaaatagctt |
2411258 |
T |
|
| Q |
314 |
tatccatcattgtattcttcttttttccttttatttgttcatctttcttcacagtaatatcataaaggccaaattcagatcctctagaatacatgctgca |
413 |
Q |
| |
|
||||||| ||| |||| ||||| ||| |||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||| |||| |
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| T |
2411257 |
catccatctttgcattcgtctttattctttttctttgttcatctttcttcacagtaatattataaaggccaaattcatatcttctaaaatacatgatgca |
2411158 |
T |
|
| Q |
414 |
ttaatgtgaaccacggtagctcgaccggggagccaagagacattgaagaagttttaagaatgacatccagagttcaagttctggaaccctggcaactaat |
513 |
Q |
| |
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||||||||| |||||||||||||| ||| ||| |||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||| |
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| T |
2411157 |
ttaatgtgagccacggtagctcgatcggtgagttaagaaacattgaagaagttttaaaaatgacatccagagtccaagctctggaaccctggaaactaac |
2411058 |
T |
|
| Q |
514 |
atagctactaacttactaacatttgcatattcaacaaacatgatgcatt-agacattttaaggaataatgtataaagttgataaccgccaatgttgaata |
612 |
Q |
| |
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||| ||||||| ||||||||| |||||||| |||||||||||||||||| || ||||||||||||||| ||| ||| | ||||||||||||||||||| |
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| T |
2411057 |
ataactactaa-ttactaacacttgcatatgcaacaaacatgatgcattaaggcattttaaggaataacttatgaaggttttaaccgccaatgttgaata |
2410959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 615 - 700
Target Start/End: Complemental strand, 2410672 - 2410587
Alignment:
| Q |
615 |
aaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatccaaattatgcagcaagt |
700 |
Q |
| |
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|||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| | |||||||| ||| ||||||||||| |
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| T |
2410672 |
aaaagggctatattttagatagcaacaaagctaattcttcatcagataccttgacttcgacgtatgatcctaatgatgcagcaagt |
2410587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 2411416 - 2411380
Alignment:
| Q |
175 |
tatgaagggagcagtgttcattttcagtctttgatac |
211 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
2411416 |
tatgaagggagcagtgttctttttcagtctttgatac |
2411380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 148; Significance: 1e-77; HSPs: 2)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 284 - 613
Target Start/End: Complemental strand, 13668 - 13341
Alignment:
| Q |
284 |
atgtaatcacttattaaaatgaaacagctttatccatcattgtattcttcttttttccttttatttgttcatctttcttcacagtaatatcataaaggcc |
383 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| ||| ||| || |||| | ||| |||||||||||||||| |||||||||||||||||||| |
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| T |
13668 |
atgtaatcacttattaaaatgaaacaacttcatccatctttgcattttttttttcttttttcttttgttcatctttcttgacagtaatatcataaaggcc |
13569 |
T |
|
| Q |
384 |
aaattcagatcctctagaatacatgctgcattaatgtgaaccacggtagctcgaccggggagccaagagacattgaagaagttttaagaatgacatccag |
483 |
Q |
| |
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|||||||||||||||| | |||||| ||||||| || | |||||||||||||| | | ||| ||||||||||||||||| | |||||||||||||||| |
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| T |
13568 |
aaattcagatcctctaaactacatgatgcattattgcaagccacggtagctcgatctgtgagttaagagacattgaagaag-tataagaatgacatccag |
13470 |
T |
|
| Q |
484 |
agttcaagttctggaaccctggcaactaatatagctactaacttactaacatttgcatattcaacaaacatgatgcatt-agacattttaaggaataatg |
582 |
Q |
| |
|
|||||||| |||||||||||| |||||| || ||||| ||||||||||| | ||| | |||||||||||||||||| || |||||||| |||||||| |
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|
| T |
13469 |
agttcaagctctggaaccctgaaaactaacctaactactgacttactaaca--tacatgtccaacaaacatgatgcattaaggcattttaaagaataatg |
13372 |
T |
|
| Q |
583 |
tataaagttgataaccgccaatgttgaataa |
613 |
Q |
| |
|
||| |||||| |||||||||||||||||||| |
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|
| T |
13371 |
tatgaagttgttaaccgccaatgttgaataa |
13341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 609 - 696
Target Start/End: Complemental strand, 13056 - 12968
Alignment:
| Q |
609 |
aataacaaaagggctatagtttggatagcaacaaa-gctaattcctcatcagataccttgacttcaatctatgatccaaattatgcagc |
696 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||| ||||||| |
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|
| T |
13056 |
aataataaaagggctatattttagatagcaacaaaagctaattcctcatcagataccttgacttcgacatatgatcctaatgatgcagc |
12968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 449 - 613
Target Start/End: Original strand, 39960001 - 39960160
Alignment:
| Q |
449 |
agagacattgaagaagttttaagaatgacatccagagttcaagttctggaaccctggcaactaatatagctactaacttactaacatttgcatattcaac |
548 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| | |||||| || | |||| ||| ||| |||||||| ||| ||| |||| |
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| T |
39960001 |
agagacaccgaagaagttttaagaatgacatccagagttcaagctttggaacactagacactaccataactaataacttac------ttgactatccaac |
39960094 |
T |
|
| Q |
549 |
aaacatgatgc-attagacattttaaggaataatgtataaagttgataaccgccaatgttgaataa |
613 |
Q |
| |
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||||||||||| || || ||||| || |||||||||||||||||| |||| ||||||||| ||||| |
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|
| T |
39960095 |
aaacatgatgcaataaggcatttgaatgaataatgtataaagttgttaactgccaatgttaaataa |
39960160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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