View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5293-Insertion-2 (Length: 610)

Name: NF5293-Insertion-2
Description: NF5293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5293-Insertion-2
NF5293-Insertion-2
[»] scaffold0008 (1 HSPs)
scaffold0008 (7-495)||(48368-48858)
[»] chr1 (19 HSPs)
chr1 (511-609)||(41503491-41503589)
chr1 (38-222)||(8671288-8671471)
chr1 (511-603)||(6892852-6892944)
chr1 (38-222)||(51441495-51441679)
chr1 (52-224)||(37463591-37463763)
chr1 (38-222)||(43241112-43241296)
chr1 (159-224)||(7813983-7814047)
chr1 (395-470)||(7814224-7814299)
chr1 (173-224)||(34827831-34827882)
chr1 (84-222)||(32083476-32083614)
chr1 (374-467)||(51234354-51234447)
chr1 (511-590)||(49265562-49265641)
chr1 (174-224)||(35829122-35829172)
chr1 (520-586)||(39429750-39429816)
chr1 (38-222)||(49348125-49348309)
chr1 (520-571)||(20795140-20795191)
chr1 (305-471)||(34827547-34827714)
chr1 (289-464)||(27445554-27445728)
chr1 (396-472)||(21275663-21275739)
[»] chr7 (21 HSPs)
chr7 (511-605)||(18219389-18219483)
chr7 (511-603)||(19727937-19728029)
chr7 (511-603)||(46993692-46993784)
chr7 (513-586)||(31026103-31026176)
chr7 (38-222)||(11593320-11593504)
chr7 (38-222)||(38896978-38897162)
chr7 (512-586)||(42565301-42565375)
chr7 (512-586)||(47106212-47106286)
chr7 (52-222)||(36651375-36651545)
chr7 (38-222)||(33350537-33350721)
chr7 (78-214)||(36870028-36870164)
chr7 (38-222)||(39907110-39907294)
chr7 (38-222)||(46356582-46356766)
chr7 (546-603)||(43022096-43022153)
chr7 (374-475)||(21517766-21517867)
chr7 (38-195)||(32629975-32630132)
chr7 (38-106)||(49028648-49028716)
chr7 (418-481)||(12965810-12965872)
chr7 (38-151)||(38606405-38606519)
chr7 (520-580)||(13554786-13554846)
chr7 (159-223)||(23087845-23087909)
[»] chr5 (20 HSPs)
chr5 (511-605)||(3199721-3199815)
chr5 (512-605)||(4399330-4399423)
chr5 (512-605)||(8571384-8571476)
chr5 (38-222)||(20318358-20318542)
chr5 (38-196)||(1274632-1274790)
chr5 (512-600)||(13916155-13916242)
chr5 (512-600)||(15005647-15005735)
chr5 (512-603)||(19514062-19514153)
chr5 (38-222)||(3394078-3394262)
chr5 (546-601)||(17737649-17737703)
chr5 (160-199)||(25937568-25937607)
chr5 (374-472)||(27634-27732)
chr5 (52-215)||(2076212-2076375)
chr5 (38-151)||(1288390-1288504)
chr5 (161-218)||(27420-27477)
chr5 (379-464)||(2075926-2076011)
chr5 (289-428)||(3394366-3394504)
chr5 (177-222)||(23979735-23979780)
chr5 (379-428)||(24178269-24178318)
chr5 (374-430)||(36200522-36200578)
[»] chr2 (19 HSPs)
chr2 (511-603)||(37139155-37139247)
chr2 (515-605)||(6267342-6267432)
chr2 (511-586)||(32244214-32244289)
chr2 (511-603)||(38443954-38444046)
chr2 (243-471)||(13148923-13149150)
chr2 (38-216)||(24584343-24584521)
chr2 (511-590)||(7213117-7213196)
chr2 (38-222)||(45368356-45368540)
chr2 (38-222)||(452347-452531)
chr2 (38-222)||(2609895-2610079)
chr2 (38-222)||(8180162-8180346)
chr2 (38-217)||(38453354-38453533)
chr2 (512-586)||(3119429-3119503)
chr2 (159-200)||(30743111-30743152)
chr2 (159-222)||(41763780-41763843)
chr2 (520-597)||(11235058-11235135)
chr2 (274-428)||(11992594-11992747)
chr2 (161-224)||(14769789-14769852)
chr2 (512-586)||(9669608-9669682)
[»] chr6 (20 HSPs)
chr6 (511-603)||(1373232-1373324)
chr6 (511-603)||(1380980-1381072)
chr6 (512-597)||(13085001-13085086)
chr6 (511-603)||(33572795-33572887)
chr6 (162-224)||(2208131-2208193)
chr6 (52-222)||(5258881-5259052)
chr6 (511-597)||(6284175-6284261)
chr6 (60-222)||(9706164-9706327)
chr6 (511-600)||(7015151-7015240)
chr6 (159-216)||(30670376-30670433)
chr6 (39-213)||(20428377-20428551)
chr6 (52-151)||(6082781-6082881)
chr6 (159-221)||(26291270-26291332)
chr6 (274-428)||(5258638-5258791)
chr6 (162-218)||(27790647-27790703)
chr6 (162-222)||(33495698-33495758)
chr6 (78-224)||(2680779-2680926)
chr6 (27-115)||(3629586-3629675)
chr6 (289-428)||(10100345-10100483)
chr6 (305-429)||(27790826-27790951)
[»] chr4 (21 HSPs)
chr4 (511-603)||(955189-955281)
chr4 (511-600)||(9993436-9993525)
chr4 (511-600)||(10426465-10426553)
chr4 (512-605)||(42954087-42954179)
chr4 (511-581)||(37615031-37615101)
chr4 (38-216)||(27450910-27451088)
chr4 (39-213)||(1212047-1212221)
chr4 (289-484)||(27450605-27450799)
chr4 (512-572)||(10353413-10353473)
chr4 (38-222)||(23907032-23907217)
chr4 (38-193)||(39707829-39707984)
chr4 (546-599)||(4525220-4525273)
chr4 (160-224)||(25867080-25867144)
chr4 (62-106)||(32911673-32911717)
chr4 (52-151)||(48623328-48623428)
chr4 (38-151)||(435599-435713)
chr4 (380-482)||(41598440-41598541)
chr4 (52-106)||(53703991-53704045)
chr4 (379-464)||(33226954-33227039)
chr4 (168-224)||(3272926-3272981)
chr4 (34-138)||(41427203-41427310)
[»] chr3 (19 HSPs)
chr3 (512-603)||(14868383-14868474)
chr3 (159-224)||(19757472-19757537)
chr3 (512-586)||(20198699-20198773)
chr3 (511-599)||(10867162-10867249)
chr3 (38-151)||(51448510-51448624)
chr3 (159-224)||(19736654-19736719)
chr3 (90-224)||(48221200-48221334)
chr3 (520-597)||(53946494-53946571)
chr3 (512-599)||(27968701-27968787)
chr3 (289-477)||(27917228-27917415)
chr3 (38-151)||(52138195-52138309)
chr3 (159-216)||(25190867-25190924)
chr3 (52-150)||(9258267-9258366)
chr3 (160-215)||(38849583-38849638)
chr3 (548-590)||(27497260-27497302)
chr3 (374-495)||(3186509-3186630)
chr3 (159-200)||(6779392-6779433)
chr3 (289-428)||(25191035-25191173)
chr3 (373-430)||(30345266-30345323)
[»] chr8 (15 HSPs)
chr8 (60-222)||(42854744-42854906)
chr8 (512-603)||(24793204-24793295)
chr8 (161-224)||(13588930-13588993)
chr8 (38-222)||(36565972-36566156)
chr8 (38-222)||(12492573-12492757)
chr8 (511-586)||(43254329-43254404)
chr8 (289-428)||(4032982-4033120)
chr8 (38-222)||(15216001-15216187)
chr8 (38-216)||(36544519-36544697)
chr8 (512-604)||(11394943-11395033)
chr8 (159-224)||(13984118-13984183)
chr8 (162-224)||(28300833-28300895)
chr8 (266-334)||(18849698-18849764)
chr8 (159-224)||(18849844-18849909)
chr8 (374-430)||(13984774-13984830)
[»] scaffold0707 (1 HSPs)
scaffold0707 (511-603)||(905-997)
[»] scaffold0286 (1 HSPs)
scaffold0286 (162-224)||(230-292)


Alignment Details
Target: scaffold0008 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 7 - 495
Target Start/End: Complemental strand, 48858 - 48368
Alignment:
Q  7 acgagggagttttgattagtgggttagcgacgatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagttttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  48858 acgagggagttttgattagtgggttagcgacgatttttccatcaaaatagaattgcaccaaatgtcaaccctaagttcttatctttttcctttagttttg 48759  T
Q  107 atgtacttacaaagcatatgcaagagttagcatcgaaatgtatgcnnnnnnn--cagatgatgtagttttgcttggagagtcgagggaggaattgattgg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||| |||    
T  48758 atgtacttacaaagcatatgcaagagttagcatcgaaatgtatgctttttttttcagatgatgtagttttgcttggagagtcgagggaggaattgaatgg 48659  T
Q  205 gaggttagagacttggagacgtgacagggtaaatgaaatgtaactttagcaaaaggtttaatagttttgccttagaagtaaaacttggagatcgtatcat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48658 gaggttagagacttggagacgtgacagggtaaatgaaatgtaactttagcaaaaggtttaatagttttgccttagaagtaaaacttggagatcgtatcat 48559  T
Q  305 ataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagcaacataaatcatcatattcgagttgtgtggttgaa 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48558 ataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagcaacataaatcatcatattcaagttgtgtggttgaa 48459  T
Q  405 atgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatatcaaacaactgtcaaaccaacgatg 495  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48458 atgaagaaaagtctcaagcgttttatataatacgaagctaccactcaagttgaagggaaaattatatcaaacaactgtcaaaccaacgatg 48368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 511 - 609
Target Start/End: Complemental strand, 41503589 - 41503491
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaaccaag 609  Q
    |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41503589 gaacaagccaaaataaaattatattatcaaaggttatagcaatttcttagcacaaggtatgcctaaaagaccactatcaacaaacaaagagaaaccaag 41503491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 8671288 - 8671471
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagttttgatgtacttacaaagcatatgcaagagttagc 137  Q
    |||||| |||| | |||||||||||||| |  |||||| |||||| ||||||||||| |||||||||||||||| | ||  | || || |||||||||||    
T  8671288 gattttcccataacaatagaattgcacctagggtcaaccctaagtccttatctttttactttagttttgatgtattgacggaacacatccaagagttagc 8671387  T
Q  138 atcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    | ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| |||||||||||||    
T  8671388 accgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagacttggag 8671471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 511 - 603
Target Start/End: Complemental strand, 6892944 - 6892852
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaa-acaaagagaa 603  Q
    |||||||| ||||||||||||||||| |||| |  ||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||    
T  6892944 gaacaagccaaaatgaaattatattaccaaaagcgatagcaatctcttcgcacaaggtgtgcc-aaaagaccactaacaacaacacaaagagaa 6892852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 51441679 - 51441495
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| |||||||||||||||||||||| |||||| | ||  | || || ||||||||||    
T  51441679 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatcttttttctttagttttggatgtattgacggaacacatccaagagttag 51441580  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  51441579 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 51441495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 37463763 - 37463591
Alignment:
Q  52 aatagaattgcaccaattgtcaactctaagttcttatcttttttctttagttttg-atgtacttacaaagcatatgcaagagttagcatcgaaatgtatg 150  Q
    ||||| ||||||||||  |||||| |||||  |||| |||||| ||||||||||| |||| |||||  | || || |||||||||||| ||| |||||||    
T  37463763 aataggattgcaccaagggtcaaccctaagcccttacctttttactttagttttggatgttcttacggaacacatccaagagttagcaccgagatgtatg 37463664  T
Q  151 cnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    |       ||||||| |||||  |||||| ||||||||||| |||| ||| ||||||||||||||||| |||||    
T  37463663 ctttttg-cagatgacgtagtcctgcttgaagagtcgagggtggaaatgaatgggaggttagagactttgagac 37463591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 43241296 - 43241112
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  43241296 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 43241197  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  43241196 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 43241112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 7813983 - 7814047
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    |||||||||||||  ||||| ||||||||||||||||||||| ||||||||| |||||||||||||    
T  7813983 cagatgatgtagtcatgcttcgagagtcgagggaggaattgaatgggaggtt-gagacttggagac 7814047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 470
Target Start/End: Original strand, 7814224 - 7814299
Alignment:
Q  395 tgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattata 470  Q
    |||||||||||||| ||| ||||||||||||||||| | ||| |||  |||| ||||||||||||| |||||||||    
T  7814224 tgtggttgaaatgaggaagagtctcaagtgttttatgtgatatgaaaataccgctcaagttgaaggaaaaattata 7814299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 34827882 - 34827831
Alignment:
Q  173 ttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  34827882 ttgcttggagagtcgagagaggaattgaatgggaggttagagacttagagac 34827831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 32083614 - 32083476
Alignment:
Q  84 cttatcttttttctttagttttg-atgtacttacaaagcatatgcaagagttagcatcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggag 182  Q
    ||||||||||| ||||||||||| ||||||| ||| | || || |||||||||||| ||| ||||||||       || |||||||| | |||||||| |    
T  32083614 cttatctttttactttagttttggatgtactgacagaacacatccaagagttagcaccgagatgtatgctttttg-caaatgatgtaatcttgcttggtg 32083516  T
Q  183 agtcgagggaggaattgattgggaggttagagacttggag 222  Q
    ||||||||||||| || | ||||||| ||||||| |||||    
T  32083515 agtcgagggaggagttaaatgggaggctagagacctggag 32083476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 467
Target Start/End: Original strand, 51234354 - 51234447
Alignment:
Q  374 taaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaatt 467  Q
    |||||||||| |||| ||||| |||||||||||| |||| || |||| || |||||| | |||||||   ||| ||||||||||||||||||||    
T  51234354 taaatcatcaaattcaagttgggtggttgaaatggagaatagcctcaggtcttttatgtgatacgaaagcaccgctcaagttgaagggaaaatt 51234447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 590
Target Start/End: Complemental strand, 49265641 - 49265562
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaa 590  Q
    |||||||  ||||||||||||||||| |||     ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  49265641 gaacaaggcaaaatgaaattatattaccaacaacaatagcaatctcttagtacaaggtgtgcataaaagactactatcaa 49265562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 35829172 - 35829122
Alignment:
Q  174 tgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  35829172 tgcttggagagtcgagagaggaattgaatgggaggttggagactttgagac 35829122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 586
Target Start/End: Original strand, 39429750 - 39429816
Alignment:
Q  520 aaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccacta 586  Q
    ||||||||||||||||| |||     ||||||||||||||||||||||||||| |||||||| ||||    
T  39429750 aaaatgaaattatattaccaacaacaatagcaatctcttagcacaaggtgtgcataaaagactacta 39429816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 49348309 - 49348125
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||| | |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  49348309 gattttcccataacaataggattgcaccaagggtcagccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 49348210  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||        |||||||||||| | | | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  49348209 caccgagatgtatgctttttgt-agatgatgtagtctcggtgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 49348125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 20795140 - 20795191
Alignment:
Q  520 aaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtg 571  Q
    ||||||||||||||||| ||||    ||||||||||||||||||||||||||    
T  20795140 aaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtg 20795191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 471
Target Start/End: Complemental strand, 34827714 - 34827547
Alignment:
Q  305 ataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagca-acataaatcatcatattcgagttgtgtggttga 403  Q
    |||||| ||||||||| |||||| ||||||   |||||||||||  |||  ||| ||||||||||| |  ||||||||  ||||| |||||  |||||||    
T  34827714 ataccctaagttacaaggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaaatcattgtattcaagttgaatggttga 34827615  T
Q  404 aatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatat 471  Q
    |||| |||| || |||| ||||||||| | ||| |||  |||  || || ||||| ||||||||||||    
T  34827614 aatggagaagagcctcatgtgttttatgtgataagaaagtactgcttaaattgaaaggaaaattatat 34827547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 464
Target Start/End: Original strand, 27445554 - 27445728
Alignment:
Q  289 ttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagca-acataaatcatcatatt 387  Q
    ||||||||| |||||||  ||||||||||||  |||||| ||| ||   |||||||||||  |||  ||| ||||||||||| |  ||||||||| ||||    
T  27445554 ttggagatcttatcata--ccccaagttacacggtttaattatgttgggtccatagtacaaaatgatggagaaatagaagcagatgtaaatcatcgtatt 27445651  T
Q  388 cgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaa 464  Q
    | |||||  ||||||||||| |||| |||  | |||||||||| | ||| |||  ||||||| || ||||| |||||    
T  27445652 caagttggttggttgaaatggagaagagttccgagtgttttatgtgataagaaagtaccacttaaattgaaaggaaa 27445728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 472
Target Start/End: Original strand, 21275663 - 21275739
Alignment:
Q  396 gtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatatc 472  Q
    ||||||||||| ||||| ||||||| ||| ||||| | ||| |||  ||||||| ||| ||||||||||||| ||||    
T  21275663 gtggttgaaataaagaagagtctcatgtgctttatttgataagaaagtaccacttaagctgaagggaaaattttatc 21275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 511 - 605
Target Start/End: Complemental strand, 18219483 - 18219389
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaac 605  Q
    |||||||| |||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18219483 gaacaagctaaaatgaaattataataataaaggatatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaac 18219389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 511 - 603
Target Start/End: Original strand, 19727937 - 19728029
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaac-aaacaaagagaa 603  Q
    |||||||| ||||||||||||||||| |||| || ||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||||||    
T  19727937 gaacaagccaaaatgaaattatattaccaaaagtgatagcaatctcttcgcacaaggtgtgcc-aaaagaccactaacaacaaaacaaagagaa 19728029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 511 - 603
Target Start/End: Original strand, 46993692 - 46993784
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaac-aaacaaagagaa 603  Q
    |||||||| ||||||||||||||||| |||| |  ||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||||||    
T  46993692 gaacaagccaaaatgaaattatattaccaaaagcgatagcaatctcttcgcacaaggtgtgcc-aaaagaccactaacaacaaaacaaagagaa 46993784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 513 - 586
Target Start/End: Complemental strand, 31026176 - 31026103
Alignment:
Q  513 acaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccacta 586  Q
    |||||| ||||||||||||||||||||||    ||||||||||||||||||||||||||| |||||||| ||||    
T  31026176 acaagccaaaatgaaattatattatcaaaaacaatagcaatctcttagcacaaggtgtgcttaaaagactacta 31026103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 11593320 - 11593504
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  11593320 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 11593419  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  11593420 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 11593504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 38896978 - 38897162
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  38896978 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttgctttagttttggatgtattgacggaacacatccaagagttag 38897077  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| |||||| |       ||||||||||||| ||| ||||  |||||||||||||| |||  |||||| |||||||||||||    
T  38897078 caccgagatgtattc-attttgcagatgatgtagtcttggttggttagtcgagggaggaagtgaacgggaggctagagacttggag 38897162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 586
Target Start/End: Original strand, 42565301 - 42565375
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccacta 586  Q
    ||||||| ||||||||||||||||| ||||    ||||||||||||||||||||||||||| |||||||| ||||    
T  42565301 aacaagccaaaatgaaattatattaccaaaaacgatagcaatctcttagcacaaggtgtgcataaaagactacta 42565375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 586
Target Start/End: Complemental strand, 47106286 - 47106212
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccacta 586  Q
    ||||||| ||||||||||||||||| ||||    ||||||||||||||||||||||||||| |||||||| ||||    
T  47106286 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgcataaaagactacta 47106212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 36651375 - 36651545
Alignment:
Q  52 aatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttagcatcgaaatgtatg 150  Q
    ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || |||||||||||| ||| |||||||    
T  36651375 aataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttagatgtattgacggaacacatccaagagttagcaccgagatgtatg 36651474  T
Q  151 cnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    |       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  36651475 c-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 36651545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 33350721 - 33350537
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||| | ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  33350721 gattttcccataacaataggattgcaccaagggtcaaccctaactccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 33350622  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  33350621 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 33350537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 214
Target Start/End: Complemental strand, 36870164 - 36870028
Alignment:
Q  78 taagttcttatcttttttctttagttttg-atgtacttacaaagcatatgcaagagttagcatcgaaatgtatgcnnnnnnncagatgatgtagttttgc 176  Q
    ||||| ||||||||||| ||||||||||| ||||||| ||  | || || |||||| ||||| ||| ||||||||       ||||||||||||| ||||    
T  36870164 taagtccttatctttttactttagttttggatgtactgacggaacacatccaagagctagcaccgagatgtatgctttttg-cagatgatgtagtcttgc 36870066  T
Q  177 ttggagagtcgagggaggaattgattgggaggttagag 214  Q
    |||| |||||||||||||||||||  |||||| |||||    
T  36870065 ttggtgagtcgagggaggaattgaacgggaggctagag 36870028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 39907294 - 39907110
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||  |||||||||| |||||| | ||  | || || ||||||||||    
T  39907294 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatcttttcactttagttttggatgtattgacggaacacatccaagagttag 39907195  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  39907194 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 39907110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 46356766 - 46356582
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  46356766 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 46356667  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||  ||| | || ||||||||||||||| |||  |||| | ||||||| |||||    
T  46356666 caccgagatgtatgc-tttttgcagatgatgtagccttggtgggtgagtcgagggaggaagtgaacgggaagctagagacctggag 46356582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 603
Target Start/End: Complemental strand, 43022153 - 43022096
Alignment:
Q  546 atagcaatctcttagcacaaggtgtgcctaaaagaccactatcaac-aaacaaagagaa 603  Q
    ||||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||    
T  43022153 atagcaatctcttagcataaggtgtgcc-aaaagaccactaacaacaaaacaaagagaa 43022096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 374 - 475
Target Start/End: Complemental strand, 21517867 - 21517766
Alignment:
Q  374 taaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatatca 473  Q
    ||||||||||||||| ||||| |||||||||||  |||| || || |  ||||| || |||||| ||  ||| |||||||||||||| |||||| |||||    
T  21517867 taaatcatcatattcaagttgggtggttgaaatcgagaagagccttagatgtttaatgtaatacaaaaatacaactcaagttgaaggaaaaattctatca 21517768  T
Q  474 aa 475  Q
    ||    
T  21517767 aa 21517766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 32629975 - 32630132
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| | ||||||||  |||||| |||||| ||||||||||| || ||||||| |||||||| ||  | || || ||||||||||    
T  32629975 gattttcccataacaataggactgcaccaagggtcaaccctaagtccttatctttttactctagttttggatgtactaacggaacacatccaagagttag 32630074  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggagga 195  Q
    || ||| ||||||||       ||||||||||||| ||||| || ||||| ||||||||    
T  32630075 caccgagatgtatgc-tttttgcagatgatgtagtcttgctaggtgagtctagggagga 32630132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 49028648 - 49028716
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagttttg 106  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||||    
T  49028648 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttg 49028716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 12965810 - 12965872
Alignment:
Q  418 tcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatatcaaacaactg 481  Q
    ||||||||||||| | |||||||  ||||||||||||||||||  ||||| |||||||||||||    
T  12965810 tcaagtgttttatgtgatacgaaagtaccactcaagttgaaggagaaatt-tatcaaacaactg 12965872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 38606405 - 38606519
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||||| || | ||||| | ||||||||  |||||| || ||| ||||||||||| |||||||||| |||||||| ||| | || || ||||||||||    
T  38606405 gatttttcgataacaataggactgcaccaagggtcaacccttagtccttatctttttgctttagttttggatgtactgacagaacacatccaagagttag 38606504  T
Q  137 catcgaaatgtatgc 151  Q
    || | | ||||||||    
T  38606505 caccaagatgtatgc 38606519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 580
Target Start/End: Complemental strand, 13554846 - 13554786
Alignment:
Q  520 aaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaaga 580  Q
    ||||||||||||||||| ||||    ||||||||||||||| | ||||||||| |||||||    
T  13554846 aaaatgaaattatattaccaaaaacaatagcaatctcttagtataaggtgtgcataaaaga 13554786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 23087909 - 23087845
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggaga 223  Q
    ||||||||||||| ||  |||| |||| || ||||||||||| ||||| ||| ||||||||||||    
T  23087909 cagatgatgtagtcttaattggcgagttgacggaggaattgaatgggatgttggagacttggaga 23087845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 511 - 605
Target Start/End: Complemental strand, 3199815 - 3199721
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaac 605  Q
    |||||||| ||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3199815 gaacaagccaaaataaaattatattaccaaaggcgatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaac 3199721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 512 - 605
Target Start/End: Original strand, 4399330 - 4399423
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaac 605  Q
    ||||||| ||||||||||||||||| |||| |  |||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||    
T  4399330 aacaagctaaaatgaaattatattaccaaacgcgatagcaatctcttaacataaggtgtgtctaaaagaccactattaacaaacaaagagaaac 4399423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 512 - 605
Target Start/End: Original strand, 8571384 - 8571476
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaac 605  Q
    ||||||| ||||||||||||||||| || | |  ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  8571384 aacaagccaaaatgaaattatattaccataagcgatagcaatctctttgcataaggtgtgcc-aaaagaccactatcaacaaacaaagagaaac 8571476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 20318358 - 20318542
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | || || || || ||||||||||    
T  20318358 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacgaaacacattcaagagttag 20318457  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||  | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  20318458 caccgagatgtatgc-tttttgcagatgatgtagtcttcatgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 20318542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 1274632 - 1274790
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||||||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  1274632 gattttcccataacaatagaattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 1274731  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaa 196  Q
    || ||| ||||||||       ||||||||||||| ||| | || |||||||||||||||    
T  1274732 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaa 1274790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 600
Target Start/End: Original strand, 13916155 - 13916242
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaaga 600  Q
    ||||||| ||||| ||||||||||| ||||    ||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||    
T  13916155 aacaagccaaaataaaattatattaccaaaaca-atagcaatctcttagcacaaggtgtgcctaaaagatcactaccaatatacaaaga 13916242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 600
Target Start/End: Original strand, 15005647 - 15005735
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaaga 600  Q
    ||||||| ||||||||||| ||||| ||||    ||||||||||||||||||||||||||| |||||||| |||| ||| | |||||||    
T  15005647 aacaagccaaaatgaaattttattaccaaaaacaatagcaatctcttagcacaaggtgtgcttaaaagactactaccaatatacaaaga 15005735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 603
Target Start/End: Complemental strand, 19514153 - 19514062
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaa-caaacaaagagaa 603  Q
    ||||||| ||||||||||||||||| || | |  ||| |||||||||||||||||||||||| |||||||||||| |||  ||||||||||||    
T  19514153 aacaagccaaaatgaaattatattaccataagcgataacaatctcttagcacaaggtgtgcc-aaaagaccactaacaagaaaacaaagagaa 19514062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 3394078 - 3394262
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagttttg-atgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  || ||| |||||| ||||||| ||| || |||||||| ||||||| ||  | || || ||||||||||    
T  3394078 gattttcccataacaataggattgcaccaagggtaaaccctaagtccttatctctttactctagttttggatgtactgacggaacacatccaagagttag 3394177  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||| ||| |||||||| |||||||||||||| || | ||||||| ||||||| |||||    
T  3394178 caccgagatgtatgctttttg-cagatgatgcagtcttgcttggtgagtcgagggaggagttaaatgggaggctagagacctggag 3394262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 546 - 601
Target Start/End: Original strand, 17737649 - 17737703
Alignment:
Q  546 atagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagag 601  Q
    ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  17737649 atagcaatctcttagtacaaggtgtgcc-aaaagaccactaacaacaaacaaagag 17737703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 25937568 - 25937607
Alignment:
Q  160 agatgatgtagttttgcttggagagtcgagggaggaattg 199  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  25937568 agatgatatagttttgcttggagagtcgagggaggaattg 25937607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 472
Target Start/End: Original strand, 27634 - 27732
Alignment:
Q  374 taaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatatc 472  Q
    ||||||||||||||| ||||| ||||| |||||  |||| |||||| |||||||||  | ||| |||  ||||||| |||||||| |||||||| ||||    
T  27634 taaatcatcatattcaagttgggtggtggaaatagagaagagtctcgagtgttttacgtgataagaaagtaccacttaagttgaaaggaaaattctatc 27732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 215
Target Start/End: Complemental strand, 2076375 - 2076212
Alignment:
Q  52 aatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttagcatcgaaatgtatg 150  Q
    ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || |||||||||||| ||| |||||||    
T  2076375 aataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatg 2076276  T
Q  151 cnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagaga 215  Q
    |       ||||||||||||| ||| | || ||||| ||||||||| |||  |||||| ||||||    
T  2076275 c-tttttgcagatgatgtagtcttggtgggtgagtcaagggaggaagtgaacgggaggctagaga 2076212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 1288504 - 1288390
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||| ||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  1288504 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatatttttactttagttttggatgtattgacggaacacatccaagagttag 1288405  T
Q  137 catcgaaatgtatgc 151  Q
    || ||| ||||||||    
T  1288404 caccgagatgtatgc 1288390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 27420 - 27477
Alignment:
Q  161 gatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagactt 218  Q
    |||||||||||  || |||||||| ||||||||||||||| ||||| ||| |||||||    
T  27420 gatgatgtagtcctgtttggagagacgagggaggaattgaatgggaagttggagactt 27477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 464
Target Start/End: Complemental strand, 2076011 - 2075926
Alignment:
Q  379 catcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaa 464  Q
    |||| ||||| ||||| ||||||||||||||||| || |||| ||||||| |  |||| |||  ||||||| |||||||| |||||    
T  2076011 catcgtattcaagttgggtggttgaaatgaagaagagcctcaggtgttttgtgcaataagaaagtaccacttaagttgaaaggaaa 2075926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 428
Target Start/End: Original strand, 3394366 - 3394504
Alignment:
Q  289 ttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagca-acataaatcatcatatt 387  Q
    ||||||||| |||||||  ||||||||||||  |||||| ||||||   |||||||||||  |||  ||| ||||||||||| |  ||||||||| ||||    
T  3394366 ttggagatcatatcata--ccccaagttacacggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcagatgtaaatcatcgtatt 3394463  T
Q  388 cgagttgtgtggttgaaatgaagaaaagtctcaagtgtttt 428  Q
    | || || |||||||||||| |||  || |||| |||||||    
T  3394464 caagctgggtggttgaaatggagatgagcctcaggtgtttt 3394504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 23979735 - 23979780
Alignment:
Q  177 ttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    |||||||||||||| ||||||||| ||||| ||| |||||||||||    
T  23979735 ttggagagtcgaggcaggaattgaatgggatgttggagacttggag 23979780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 24178269 - 24178318
Alignment:
Q  379 catcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgtttt 428  Q
    |||||||||| ||||| |||||||||||| |||| || ||||||||||||    
T  24178269 catcatattcaagttgggtggttgaaatggagaagagcctcaagtgtttt 24178318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 36200522 - 36200578
Alignment:
Q  374 taaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttat 430  Q
    ||||||||||||||  ||||| |||||||||||| |||| || |||| |||||||||    
T  36200522 taaatcatcatatttaagttgggtggttgaaatggagaagagactcatgtgttttat 36200578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 511 - 603
Target Start/End: Original strand, 37139155 - 37139247
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaa 603  Q
    |||||||| ||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  37139155 gaacaagctaaaatgaaattatattaacaaaggcgatagcaatctcttagcacaaggtgtgcctaaaagaccactaccaataaacaaagagaa 37139247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 515 - 605
Target Start/End: Original strand, 6267342 - 6267432
Alignment:
Q  515 aagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaac 605  Q
    |||| ||||||||||||||||| ||||||  |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6267342 aagctaaaatgaaattatattaccaaaggcgatagcaatttcttagcataaggtgtgcctaaaagaccactatcaacaaacaaagagaaac 6267432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 511 - 586
Target Start/End: Complemental strand, 32244289 - 32244214
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccacta 586  Q
    |||||||| ||||| ||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||    
T  32244289 gaacaagccaaaataaaattatattaccaaaagtgatagcaatctcttagcacaaggtgtgcctaaaagaccacta 32244214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 511 - 603
Target Start/End: Complemental strand, 38444046 - 38443954
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaa 603  Q
    |||||||  ||||||||||||||||| |||| |  ||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  38444046 gaacaagttaaaatgaaattatattaccaaatgcgataacaatctcttagcataaggtgtgcctaaaagaccactaccaataaacaaagagaa 38443954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 243 - 471
Target Start/End: Original strand, 13148923 - 13149150
Alignment:
Q  243 tgtaactttagcaaaaggtttaatagttttgccttagaagtaaaacttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccat 342  Q
    |||||||| |||||||||   ||||||||  |||| || || ||| ||||||||| |||||||  ||||||||||||  |||||| |||||    |||||    
T  13148923 tgtaacttcagcaaaaggagaaatagtttaaccttggaggtgaaagttggagatcatatcata--ccccaagttacacggtttaaatatctcaggtccat 13149020  T
Q  343 agtacatcatggaggataaatagaagca-acataaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaag 441  Q
    ||||||  |||  ||| ||||||||| | | | |||||||| ||||| |||||  |||||||||||||||| ||  ||| |||||| |||| ||| |||     
T  13149021 agtacaaaatgacggagaaatagaagtagatacaaatcatcgtattcaagttggatggttgaaatgaagaagagcttcaggtgtttcatatgataagaaa 13149120  T
Q  442 ctaccactcaagttgaagggaaaattatat 471  Q
     ||||||||||||| || ||||||||||||    
T  13149121 gtaccactcaagttaaaaggaaaattatat 13149150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 24584521 - 24584343
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagttttg-atgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| ||||||||||| ||||||| ||  | || || |||||||||     
T  24584521 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtactaacggaacacatccaagagttat 24584422  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagac 216  Q
    || ||| |||||||        ||||||||||||| |||||||| ||||| |||||||||||||  |||||| |||||||    
T  24584421 caccgagatgtatg-ttttttgcagatgatgtagtcttgcttggtgagtcaagggaggaattgaacgggaggctagagac 24584343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 590
Target Start/End: Complemental strand, 7213196 - 7213117
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaa 590  Q
    |||||||  ||||||||||||||||||||||  | ||||||||||||||| ||||| ||||| |||||||| ||||||||    
T  7213196 gaacaagtcaaaatgaaattatattatcaaaaataatagcaatctcttagtacaagatgtgcttaaaagactactatcaa 7213117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 45368540 - 45368356
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagttttg-atgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| | ||||||||  |||||| |||||| ||||||||||| ||||||||||| ||||| | ||  | || || ||||| ||||    
T  45368540 gattttcccataacaataggactgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagaattag 45368441  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| |||||||| |||||||||||||| || | ||||||| ||||||| |||||    
T  45368440 caccgagatgtatgctttttg-cagatgatgtagtcttgcttggtgagtcgagggaggagttaaatgggaggctagagacctggag 45368356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 452531 - 452347
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  452531 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 452432  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || |||| |||||||||| |||  |||||| ||||||| |||||    
T  452431 caccgagatgtatgc-tttttacagatgatgtagtcttggtgggtgagttgagggaggaagtgaacgggaggctagagacctggag 452347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 2609895 - 2610079
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  2609895 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 2609994  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| |||| || |||||    
T  2609995 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagaaacctggag 2610079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 8180162 - 8180346
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||| ||||  ||||||  ||||| ||||||||||| |||||||||| |||||| | || || || || ||||||||||    
T  8180162 gattttcccataacaataggattgcgccaagggtcaaccataagtccttatctttttactttagttttggatgtattgacgaaacacatccaagagttag 8180261  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  8180262 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 8180346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 217
Target Start/End: Complemental strand, 38453533 - 38453354
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| || |||| ||| |||||||||| |||||| | ||||| || || ||||||||||    
T  38453533 gattttcccataacaataggattgcaccaagggtcaaccctaagtcctcatctctttactttagttttggatgtattgacaaaacacatccaagagttag 38453434  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagact 217  Q
    || ||| |||||||        ||||||||||||| ||| | || ||||||||||||||| |||  |||||| ||||||||    
T  38453433 caccgagatgtatg-tattttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagact 38453354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 586
Target Start/End: Original strand, 3119429 - 3119503
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccacta 586  Q
    ||||||| ||||||||||||||||| ||||    |||||||||||||||||||| |||||| |||||||| ||||    
T  3119429 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaagtgtgcttaaaagactacta 3119503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 30743111 - 30743152
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattga 200  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  30743111 cagatgatgtagttttgcttggtgagtcgagggaggaattga 30743152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 41763843 - 41763780
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    ||||||||||||| |||||||| |||||||||||||| || | ||||||| ||||||| |||||    
T  41763843 cagatgatgtagtcttgcttggtgagtcgagggaggagttaaatgggaggctagagacctggag 41763780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 520 - 597
Target Start/End: Complemental strand, 11235135 - 11235058
Alignment:
Q  520 aaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaa 597  Q
    ||||||||||||||||| ||||    |||| |||||||| ||||||||||||| |||||||| |||| ||||| ||||    
T  11235135 aaaatgaaattatattaccaaaaacaatagtaatctcttcgcacaaggtgtgcttaaaagactactaccaacacacaa 11235058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 11992747 - 11992594
Alignment:
Q  274 ccttagaagtaaaacttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagca-ac 372  Q
    ||||||| || ||| ||||||||| |||||||  ||||||||||||  |||||| ||||||   || ||||||||  |||  ||| ||||||||||| |     
T  11992747 ccttagaggtgaaagttggagatcatatcata--ccccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcagat 11992650  T
Q  373 ataaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgtttt 428  Q
     ||||||||| ||||| || || |||||||||||| |||| || |||| |||||||    
T  11992649 gtaaatcatcgtattcaagctgggtggttgaaatggagaagagcctcaggtgtttt 11992594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 14769789 - 14769852
Alignment:
Q  161 gatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    |||||||||||  ||||||||||||||||||| ||||| | || |||||| |||||||| ||||    
T  14769789 gatgatgtagtcatgcttggagagtcgagggacgaattcaatgagaggttggagacttgaagac 14769852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 586
Target Start/End: Complemental strand, 9669682 - 9669608
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccacta 586  Q
    ||||||| ||||||||||||||||| ||||    ||| |||| ||||||||||| |||||| |||||||| ||||    
T  9669682 aacaagccaaaatgaaattatattaccaaaaacaataacaatttcttagcacaaagtgtgcataaaagactacta 9669608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 511 - 603
Target Start/End: Complemental strand, 1373324 - 1373232
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaac-aaacaaagagaa 603  Q
    |||||||| ||||||||||||||||| || | |  |||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  1373324 gaacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcacaaggtgtgcc-aaaagaccactaacaacaaaacaaagagaa 1373232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 511 - 603
Target Start/End: Complemental strand, 1381072 - 1380980
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaac-aaacaaagagaa 603  Q
    |||||||| ||||||||||||||||| || | |  |||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  1381072 gaacaagccaaaatgaaattatattaccataagcgatagcaatctcttagcacaaggtgtgcc-aaaagaccactaacaacaaaacaaagagaa 1380980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 512 - 597
Target Start/End: Original strand, 13085001 - 13085086
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaa 597  Q
    ||||||| ||||||||||||||||| ||||    ||||||||||||||||||||||||||| |||||||| |||| ||||| ||||    
T  13085001 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgcttaaaagactactaccaacatacaa 13085086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 511 - 603
Target Start/End: Complemental strand, 33572887 - 33572795
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaa 603  Q
    |||||||  |||||| |||||||||||||||||  |||| |||||||||| | | ||||||||||||||||||||| ||| | ||||||||||    
T  33572887 gaacaagtcaaaatgtaattatattatcaaaggcgatagtaatctcttagtatacggtgtgcctaaaagaccactaccaatatacaaagagaa 33572795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 2208193 - 2208131
Alignment:
Q  162 atgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    |||||||||| ||||||||| | |||||||||||||||| ||| |||||||||||||||||||    
T  2208193 atgatgtagtcttgcttggaaaatcgagggaggaattgaatggaaggttagagacttggagac 2208131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 5259052 - 5258881
Alignment:
Q  52 aatagaattgcaccaattgtcaactctaagttcttatctttttt-ctttagttttg-atgtacttacaaagcatatgcaagagttagcatcgaaatgtat 149  Q
    ||||| ||||||||||  || ||| |||||| |||||||||||| ||||||||||| ||||||| ||  | || || |||||||||||| ||| ||||||    
T  5259052 aataggattgcaccaagggtaaaccctaagtccttatcttttttactttagttttggatgtactgacggaacacatccaagagttagcaccgagatgtat 5258953  T
Q  150 gcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    ||       ||||||||| ||| |||||||| |||||||||||||| || | ||||||| ||||||| |||||    
T  5258952 gctttttg-cagatgatgaagtcttgcttggtgagtcgagggaggagttaaatgggaggctagagacctggag 5258881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 511 - 597
Target Start/End: Original strand, 6284175 - 6284261
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaa 597  Q
    |||||||  ||||||||||||||||| ||||    ||||||||||||||||||||||||||| |||||||| |||| ||||| ||||    
T  6284175 gaacaagtcaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgcttaaaagactactaccaacatacaa 6284261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 9706164 - 9706327
Alignment:
Q  60 tgcaccaattgtcaactctaagttcttatcttttttctttagttttg-atgtacttacaaagcatatgcaagagttagcatcgaaatgtatgcnnnnnnn 158  Q
    ||||||||  ||||||  ||||| ||||||||||| ||||||||||| ||||||| || || || || |||||||||||| |||  |||||||           
T  9706164 tgcaccaagggtcaaccttaagtccttatctttttactttagttttggatgtactgacgaaacacatccaagagttagcaccgagttgtatgctttttcc 9706263  T
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || |||||||||| |||||||| |||||||||||| | || | ||||||| ||||||| |||||    
T  9706264 caaatgatgtagtcttgcttggtgagtcgagggagaagttaaatgggaggctagagacctggag 9706327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 511 - 600
Target Start/End: Complemental strand, 7015240 - 7015151
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaaga 600  Q
    |||||| | ||||||||||||||||| ||||    ||||||||||||||||||||| ||||| |||||||| |||| ||||| |||||||    
T  7015240 gaacaaaccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaagatgtgcttaaaagactactaccaacatacaaaga 7015151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 30670376 - 30670433
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagac 216  Q
    ||||||||||||| |||||||| |||||||||||||||||||  ||||||||||||||    
T  30670376 cagatgatgtagtcttgcttggtgagtcgagggaggaattgaacgggaggttagagac 30670433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 213
Target Start/End: Complemental strand, 20428551 - 20428377
Alignment:
Q  39 atttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagttttg-atgtacttacaaagcatatgcaagagttagc 137  Q
    ||||| |||| | ||||| | ||||||||  |||||| ||||||| ||||||| || |||||| |||| ||||||||||  | || || |||||||||||    
T  20428551 attttcccataacaataggactgcaccaagggtcaaccctaagtttttatcttattactttagctttggatgtacttacggaacacattcaagagttagc 20428452  T
Q  138 atcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttaga 213  Q
    | ||| ||||||||       ||||||||||||| |||||||| ||||| |||||||| || | ||||||| ||||    
T  20428451 accgagatgtatgc-tttttgcagatgatgtagtcttgcttggtgagtcaagggaggagttaaatgggaggctaga 20428377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 6082781 - 6082881
Alignment:
Q  52 aatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttagcatcgaaatgtatg 150  Q
    ||||| ||||||||||  |||||| |||||||||||||||||| |||||||||| |||||| | ||  | || || |||||||||||| ||| |||||||    
T  6082781 aataggattgcaccaagggtcaaccctaagttcttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatg 6082880  T
Q  151 c 151  Q
    |    
T  6082881 c 6082881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 26291270 - 26291332
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttgga 221  Q
    |||||||||||||  |||||||| |||||||||||||||||  ||||||||||  ||||||||    
T  26291270 cagatgatgtagtcctgcttggaaagtcgagggaggaattgcatgggaggttaatgacttgga 26291332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 5258791 - 5258638
Alignment:
Q  274 ccttagaagtaaaacttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagc-aac 372  Q
    |||| ||||| ||| ||||||||| |||||||  |||||||||||| ||||||| ||||||   |||||||||||  |||  ||| ||||||||||  |     
T  5258791 ccttggaagtgaaagttggagatcatatcata--ccccaagttacacagtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagctgat 5258694  T
Q  373 ataaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgtttt 428  Q
     || |||||| ||||| || || |||||||||||| |||| || |||| |||||||    
T  5258693 gtacatcatcgtattcaagctgggtggttgaaatggagaagagcctcatgtgtttt 5258638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 27790647 - 27790703
Alignment:
Q  162 atgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagactt 218  Q
    ||||||||||  || |||||| ||||||||||||||||| |||||||||||| ||||    
T  27790647 atgatgtagtcatgtttggagtgtcgagggaggaattgaatgggaggttagatactt 27790703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 33495698 - 33495758
Alignment:
Q  162 atgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    |||||||||| |||||||| |||| ||||||||||||||   ||||| |||||||||||||    
T  33495698 atgatgtagtcttgcttggtgagttgagggaggaattgaacaggaggctagagacttggag 33495758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 2680926 - 2680779
Alignment:
Q  78 taagttcttatctttttt-ctttagttttg-atgtacttacaaagcatatgcaagagttagcatcgaaatgtatgcnnnnnnncagatgatgtagttttg 175  Q
    ||||| |||||||||||| ||||||||||| ||||||||||| | || || |||| ||||||||||| |||||| |       | ||||| ||||| |||    
T  2680926 taagtccttatcttttttactttagttttggatgtacttacataacacatccaagtgttagcatcgagatgtatac-attttgcggatgacgtagtcttg 2680828  T
Q  176 cttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    ||||  |||||||| |||||| |||  |||| | |||||||||||||||    
T  2680827 cttgatgagtcgagtgaggaactgaacgggatgctagagacttggagac 2680779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 3629586 - 3629675
Alignment:
Q  27 gggttagcgacgatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtactta 115  Q
    |||||| |||||||||| |||| | ||||| ||||||| ||  ||||||  ||||  ||||||||||| |||||||||| ||||||||||    
T  3629586 gggttaccgacgattttcccataacaataggattgcactaagggtcaaccttaagcccttatctttttactttagttttggatgtactta 3629675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 428
Target Start/End: Complemental strand, 10100483 - 10100345
Alignment:
Q  289 ttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagc-aacataaatcatcatatt 387  Q
    ||||||||| |||||||  ||||||||||||  |||||| ||||||   |||||||||||  |||  ||| ||||||||||  | |||||||||| ||||    
T  10100483 ttggagatcatatcata--ccccaagttacacggtttaaatatcttgggtccatagtacaaaatgtcggagaaatagaagctgatataaatcatcgtatt 10100386  T
Q  388 cgagttgtgtggttgaaatgaagaaaagtctcaagtgtttt 428  Q
    | || || ||||||| |||| |||| || |||| |||||||    
T  10100385 caagctgggtggttggaatggagaagagcctcatgtgtttt 10100345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 429
Target Start/End: Original strand, 27790826 - 27790951
Alignment:
Q  305 ataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagcaaca-taaatcatcatattcgagttgtgtggttga 403  Q
    |||| |||| |||||  |||||| ||||||  ||||||||||||  |||  | ||||||||||||||   |||||||||||| |  ||||| ||||||||    
T  27790826 atactccaaattacatggtttaaatatcttggatccatagtacaaaatgacgcataaatagaagcaagtctaaatcatcataataaagttgagtggttga 27790925  T
Q  404 aatgaagaaaagtctcaagtgtttta 429  Q
    |||  |||| || |||||||||||||    
T  27790926 aatagagaagagcctcaagtgtttta 27790951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 511 - 603
Target Start/End: Complemental strand, 955281 - 955189
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaa-acaaagagaa 603  Q
    |||||||| ||||||||||||||||| |||| |  ||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||    
T  955281 gaacaagccaaaatgaaattatattaccaaaagcgatagcaatctcttcgcacaaggtgtgcc-aaaagaccactaacaacaacacaaagagaa 955189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 511 - 600
Target Start/End: Complemental strand, 9993525 - 9993436
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaaga 600  Q
    |||||| | ||||||||||||||||| |||| |  ||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||    
T  9993525 gaacaaaccaaaatgaaattatattaccaaaagcaatagcaatctcttagcacaagatgtgcctaaaagaccactaccaatatacaaaga 9993436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 511 - 600
Target Start/End: Complemental strand, 10426553 - 10426465
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaaga 600  Q
    |||||||| ||||||||||||||||| ||||  | ||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||    
T  10426553 gaacaagccaaaatgaaattatattaccaaaa-taatagcaatctcttagcataaggtgtgcctaaaagaccactaccaatatacaaaga 10426465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 512 - 605
Target Start/End: Complemental strand, 42954179 - 42954087
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaaac 605  Q
    ||||||| ||||||||||||||||| || |    ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  42954179 aacaagccaaaatgaaattatattaccataaacgataacaatctcttagcacaaggtgtgcc-aaaaggccactatcaacaaacaaagagaaac 42954087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 511 - 581
Target Start/End: Original strand, 37615031 - 37615101
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagac 581  Q
    |||||||| ||||||||||||||||| ||||    ||||||||||||||||||||||||||||||||||||    
T  37615031 gaacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgcctaaaagac 37615101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 27451088 - 27450910
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||||| ||||||||  |||||| |||||| ||| ||||||| |||||||||| |||||||| || || || || |||||||||     
T  27451088 gattttcccataacaatagaactgcaccaagggtcaaccctaagtccttctctttttactttagttttggatgtactaacgaaacacatccaagagttaa 27450989  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagac 216  Q
    || ||| ||||||||       | ||||||||||| |||||||| |||||||||||||| |  | ||||||| |||||||    
T  27450988 caccgagatgtatgctttttgcc-gatgatgtagtcttgcttggtgagtcgagggaggagtcaaatgggaggctagagac 27450910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 39 - 213
Target Start/End: Complemental strand, 1212221 - 1212047
Alignment:
Q  39 atttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttagc 137  Q
    ||||| |||| | ||||| ||||||||||   ||||| |||||| ||||||||||  |||||||||| |||||||||||| | || ||  ||||||||||    
T  1212221 attttcccataacaataggattgcaccaaggttcaaccctaagtccttatcttttcactttagttttggatgtacttacataacacatctaagagttagc 1212122  T
Q  138 atcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttaga 213  Q
    | ||| ||||||||        |||||||||||| ||| |||| |||||||||||| ||||||  |||||| ||||    
T  1212121 accgagatgtatgctttttgg-agatgatgtagtcttgattggcgagtcgagggagaaattgaacgggaggctaga 1212047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 484
Target Start/End: Complemental strand, 27450799 - 27450605
Alignment:
Q  289 ttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagca-acataaatcatcatatt 387  Q
    ||||||||| |||||||  |||||||||||| ||||||  ||||||   |||||||| ||  |||  ||| ||||||||||| |  ||||||||| ||||    
T  27450799 ttggagatcatatcata--ccccaagttacacagtttacatatcttgggtccatagtgcaaaatgatggagaaatagaagcagatgtaaatcatcgtatt 27450702  T
Q  388 cgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatatcaaacaactgtca 484  Q
    | || || |||||||||||| |||| || |||||||||||| |   ||| |||  ||||||| ||| |||| |||||||| ||||| ||||| ||||    
T  27450701 caagctgggtggttgaaatggagaagagcctcaagtgttttgtgcgataagaaagtaccacttaagctgaaaggaaaattctatcagacaacagtca 27450605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 572
Target Start/End: Original strand, 10353413 - 10353473
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgc 572  Q
    ||||||| ||||||||||||||||| ||||    |||||||||||||||||||||||||||    
T  10353413 aacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcacaaggtgtgc 10353473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 23907217 - 23907032
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || |  ||||||||||    
T  23907217 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacaaccaagagttag 23907118  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||        |||||||||||| ||| | || ||||||||| ||||| |||  |||||| ||||||| |||||    
T  23907117 caccgagatgtatgctttttgcaagatgatgtagtcttggtgggtgagtcgaggaaggaagtgaacgggaggctagagacctggag 23907032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 39707829 - 39707984
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||| ||  || ||| |||||| ||||||||||| |||||||||| |||||||||||| | || || |||||||| |    
T  39707829 gattttcccataacaataggattgcactaagggttaaccctaagtccttatctttttactttagttttggatgtacttacagaacacatccaagagtttg 39707928  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggag 193  Q
    || ||| |||||||        ||||||||||||| ||| |||| ||||||||||||    
T  39707929 caccgatatgtatg-ttttttgcagatgatgtagtcttgtttggtgagtcgagggag 39707984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 4525273 - 4525220
Alignment:
Q  546 atagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaag 599  Q
    |||||||||||| |||||||||||||||||| ||||||||| ||| | ||||||    
T  4525273 atagcaatctctcagcacaaggtgtgcctaagagaccactaccaaaatacaaag 4525220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 25867080 - 25867144
Alignment:
Q  160 agatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    ||||||| ||||| | |||||||||||||||||||||||   ||||||||| |||||||| ||||    
T  25867080 agatgatatagttctacttggagagtcgagggaggaattacatgggaggttggagacttgaagac 25867144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 32911717 - 32911673
Alignment:
Q  62 caccaattgtcaactctaagttcttatcttttttctttagttttg 106  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||    
T  32911717 caccaagtgtcaactctaagtccttatctttttgctttagttttg 32911673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 48623428 - 48623328
Alignment:
Q  52 aatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttagcatcgaaatgtatg 150  Q
    ||||| ||||||||||   ||||| |||||||||||||||||| |||||||||| |||||| | ||  | || || |||||||||||| ||| |||||||    
T  48623428 aataggattgcaccaaggttcaaccctaagttcttatctttttactttagttttggatgtattgacgtaacacatccaagagttagcaccgagatgtatg 48623329  T
Q  151 c 151  Q
    |    
T  48623328 c 48623328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 435599 - 435713
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| | ||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  435599 gattttcccataacaataggagtgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 435698  T
Q  137 catcgaaatgtatgc 151  Q
    || ||| ||||||||    
T  435699 caccgagatgtatgc 435713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 482
Target Start/End: Original strand, 41598440 - 41598541
Alignment:
Q  380 atcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatatcaaacaac 479  Q
    |||| |||| ||||| |||||||||||||| | | | |||||||||| ||| ||||| |||  |||   ||||||||||||||||| | |||||||||||    
T  41598440 atcaaattcaagttgagtggttgaaatgaataga-gcctcaagtgttctatgtaatatgaaagtacttatcaagttgaagggaaaaatttatcaaacaac 41598538  T
Q  480 tgt 482  Q
    |||    
T  41598539 tgt 41598541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 53703991 - 53704045
Alignment:
Q  52 aatagaattgcaccaattgtcaactctaagttcttatcttttttctttagttttg 106  Q
    ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||||    
T  53703991 aataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttg 53704045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 33226954 - 33227039
Alignment:
Q  379 catcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaa 464  Q
    |||||||||| || || |||||||||||| |||| ||||||| ||||||| ||  ||| |||  ||||||| |||||||| |||||    
T  33226954 catcatattcaagctgggtggttgaaatggagaagagtctcaggtgttttgtacgataagaaagtaccacttaagttgaaaggaaa 33227039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 3272926 - 3272981
Alignment:
Q  168 tagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    |||| |||||| ||||||||||||||||||||| || |||||| ||| |||||||||    
T  3272926 tagtattgcttagagagtcgagggaggaattgaatgagaggttggag-cttggagac 3272981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 41427203 - 41427310
Alignment:
Q  34 cgacgatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatctttttt--ctttagtttt-gatgtacttacaaagcatatgcaag 130  Q
    ||||||||||||||| | ||||| |||||||| | |||||||  | || |||||| ||||||  |||||||||| || ||||||||||| ||  | ||||    
T  41427203 cgacgatttttccataacaataggattgcaccgagtgtcaaccattagctcttatttttttttactttagttttggaagtacttacaaaacacgtccaag 41427302  T
Q  131 agttagca 138  Q
    ||||||||    
T  41427303 agttagca 41427310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 512 - 603
Target Start/End: Complemental strand, 14868474 - 14868383
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaa-acaaagagaa 603  Q
    ||||||| ||||||||||||||||| |||| |  ||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||    
T  14868474 aacaagccaaaatgaaattatattaccaaaagcgatagcaatctcttcgcacaaggtgtgcc-aaaagaccactaacaacaacacaaagagaa 14868383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 19757472 - 19757537
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    ||||||||| |||  |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  19757472 cagatgatgcagtcctgcttggagagttgagggaggaattgaatgggaggttagagacttggagac 19757537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 586
Target Start/End: Complemental strand, 20198773 - 20198699
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccacta 586  Q
    ||||||| ||||||||||||||||| ||||  | ||||||||||||||| ||||||||||| |||||||| ||||    
T  20198773 aacaagccaaaatgaaattatattaccaaaaataatagcaatctcttagaacaaggtgtgcataaaagactacta 20198699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 511 - 599
Target Start/End: Original strand, 10867162 - 10867249
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaag 599  Q
    |||||||| ||||||||||||||||| ||||    |||||||||||| ||||||||||||||||||||||| |||| ||| | ||||||    
T  10867162 gaacaagccaaaatgaaattatattaccaaaaca-atagcaatctctcagcacaaggtgtgcctaaaagactactaccaatatacaaag 10867249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 51448624 - 51448510
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  51448624 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 51448525  T
Q  137 catcgaaatgtatgc 151  Q
    |||||| ||||||||    
T  51448524 catcgagatgtatgc 51448510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 19736654 - 19736719
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    ||||||||| |||  |||||||||||| |||||||||||||| |||||| |||||||||| |||||    
T  19736654 cagatgatgcagtcctgcttggagagttgagggaggaattgaatgggagattagagacttagagac 19736719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 48221200 - 48221334
Alignment:
Q  90 ttttttctttagtttt-gatgtacttacaaagcatatgcaagagttagcatcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcga 188  Q
    ||||| |||||||||| ||||||||| |||| || || |||||||||||||||| |||||  |       || ||||||||||| ||| | |||||||||    
T  48221200 tttttactttagttttagatgtacttgcaaaacacatccaagagttagcatcgagatgtacactctttg-catatgatgtagttctgcattgagagtcga 48221298  T
Q  189 gggaggaattgattgggaggttagagacttggagac 224  Q
    | |||||||||| |||||||||  ||||||||||||    
T  48221299 gagaggaattgaatgggaggttgaagacttggagac 48221334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 597
Target Start/End: Complemental strand, 53946571 - 53946494
Alignment:
Q  520 aaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaa 597  Q
    ||||||||||||||||| ||||    |||||||||||||||||||| |||||| |||||||| |||| ||||| ||||    
T  53946571 aaaatgaaattatattaccaaaaacaatagcaatctcttagcacaatgtgtgcttaaaagactactaccaacatacaa 53946494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 599
Target Start/End: Original strand, 27968701 - 27968787
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaag 599  Q
    ||||||| ||||| ||||||||||| ||||    |||||||||||  |||||||||||||||||| ||||||||||||| | ||||||    
T  27968701 aacaagccaaaataaaattatattaccaaaaca-atagcaatctcccagcacaaggtgtgcctaagagaccactatcaatatacaaag 27968787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 477
Target Start/End: Original strand, 27917228 - 27917415
Alignment:
Q  289 ttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagca-acataaatcatcatatt 387  Q
    ||||||||| ||||||||  |||||||||||  |||||| |||||| | |||||||||||  |||  ||| ||||| ||||| | |||||||||| ||||    
T  27917228 ttggagatcatatcatat--cccaagttacacggtttaaatatcttgagtccatagtacaaaatgacggagaaatataagcatatataaatcatcgtatt 27917325  T
Q  388 cgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatatcaaaca 477  Q
    | ||||| || | ||||||  |||| || |||| ||||||||| | |||  ||  ||||||| |||||||| | |||||| |||| ||||    
T  27917326 caagttgggtagctgaaatagagaagagcctcatgtgttttatgtgataaaaaagtaccacttaagttgaatgaaaaattctatcgaaca 27917415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 52138195 - 52138309
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||||||||||||||   ||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  52138195 gattttcccataacaatagaattgcaccaaggatcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 52138294  T
Q  137 catcgaaatgtatgc 151  Q
    || ||| ||||||||    
T  52138295 caccgagatgtatgc 52138309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 25190867 - 25190924
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagac 216  Q
    ||||||||||||| |||||||| |||||||||||||| || | ||||||| |||||||    
T  25190867 cagatgatgtagtcttgcttggtgagtcgagggaggagttaaatgggaggctagagac 25190924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 9258267 - 9258366
Alignment:
Q  52 aatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttagcatcgaaatgtatg 150  Q
    ||||| || |||||||| | |||| | |||| ||||||||||| |||||||||| |||||||||||  | || || |||||||||||| ||| |||||||    
T  9258267 aataggatggcaccaatggacaaccccaagtccttatctttttactttagttttggatgtacttacggaacacatccaagagttagcaccgagatgtatg 9258366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 38849583 - 38849638
Alignment:
Q  160 agatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagaga 215  Q
    |||||||||||| |||||||| ||||||| ||||||||||| | ||||| ||||||    
T  38849583 agatgatgtagtcttgcttggtgagtcgaaggaggaattgaataggaggctagaga 38849638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 590
Target Start/End: Original strand, 27497260 - 27497302
Alignment:
Q  548 agcaatctcttagcacaaggtgtgcctaaaagaccactatcaa 590  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||    
T  27497260 agcaatctcttagtacaaggtgtgcttaaaagactactatcaa 27497302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 495
Target Start/End: Original strand, 3186509 - 3186630
Alignment:
Q  374 taaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttatataatacgaagctaccactcaagttgaagggaaaattatatca 473  Q
    |||| |||| ||||| ||||| ||||||||||||||||| | | ||| ||||||||  | ||| |||  || |||| |||||||| ||||| |||||||     
T  3186509 taaaacatcgtattcaagttgggtggttgaaatgaagaatattttcatgtgttttaggtgataagaaagtatcacttaagttgaaaggaaagttatatcg 3186608  T
Q  474 aacaactgtcaaaccaacgatg 495  Q
     ||||| |||  ||||||||||    
T  3186609 gacaacagtcccaccaacgatg 3186630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 6779392 - 6779433
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattga 200  Q
    |||||||||||||| ||||| |||| ||||||||||||||||    
T  6779392 cagatgatgtagttctgcttagagaatcgagggaggaattga 6779433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 428
Target Start/End: Original strand, 25191035 - 25191173
Alignment:
Q  289 ttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagcaaca-taaatcatcatatt 387  Q
    ||||||||| |||||||   |||||||||||  |||||| ||||||   || ||||||||  |||  ||| ||||||||||||   ||||||||| ||||    
T  25191035 ttggagatcatatcatag--cccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaagcaaatgtaaatcatcgtatt 25191132  T
Q  388 cgagttgtgtggttgaaatgaagaaaagtctcaagtgtttt 428  Q
    | || || |||||||||||| |||| ||||||| |||||||    
T  25191133 caagctgggtggttgaaatggagaagagtctcaggtgtttt 25191173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 30345266 - 30345323
Alignment:
Q  373 ataaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttat 430  Q
    |||||||||  ||||| ||||| |||||||||||| |||| ||||||| |||||||||    
T  30345266 ataaatcatagtattcaagttgggtggttgaaatggagaagagtctcaggtgttttat 30345323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 42854906 - 42854744
Alignment:
Q  60 tgcaccaattgtcaactctaagttcttatcttttttctttagttttg-atgtacttacaaagcatatgcaagagttagcatcgaaatgtatgcnnnnnnn 158  Q
    ||||||||  |||||| |||||| ||||||||||| ||||||||||| |||| || | | | || || |||||||||||| ||| ||||||||           
T  42854906 tgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtcctgatagaacacatccaagagttagcaccgagatgtatgctttttg- 42854808  T
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    ||||||||||||| |||||||| |||||||||||||| || | ||||||| ||||||| |||||    
T  42854807 cagatgatgtagtcttgcttggtgagtcgagggaggagttaaatgggaggctagagacctggag 42854744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 512 - 603
Target Start/End: Original strand, 24793204 - 24793295
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaac-aaacaaagagaa 603  Q
    ||||||| ||||||||||||||||| || | |  ||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  24793204 aacaagccaaaatgaaattatattaccataagcgatatcaatctcttagcacaaggtgtgcc-aaaagaccactaacaacaaaacaaagagaa 24793295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 13588930 - 13588993
Alignment:
Q  161 gatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||||||| | ||||||||||    
T  13588930 gatgatgtagtcttgcttggagagtcgatggaggaattgaatgggaggttaaacacttggagac 13588993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 36566156 - 36565972
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||| ||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  36566156 gattttcccataacaataggattgcaccaagggtcaaccctaagtccttatctttttactttagttttggatgtattgacggaacacatccaagagttag 36566057  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| ||||||| |||||    
T  36566056 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagacctggag 36565972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 12492757 - 12492573
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    ||||||||||| | ||||| ||||||||||  |||||   ||||||||||||||||| |||||||||| |||||| | ||  | || || ||||||||||    
T  12492757 gatttttccataacaataggattgcaccaagggtcaatcttaagttcttatctttttactttagttttggatgtattgacggaacacatccaagagttag 12492658  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||   ||||| ||||||| |||||    
T  12492657 caccgagatgtatgc-tttttgcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaactggaggctagagacctggag 12492573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 586
Target Start/End: Complemental strand, 43254404 - 43254329
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccacta 586  Q
    |||||||| ||||||||||||||||| ||||    ||||||||||||||||| ||||||||| |||||||| ||||    
T  43254404 gaacaagccaaaatgaaattatattaccaaaaacaatagcaatctcttagcaaaaggtgtgcttaaaagactacta 43254329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 428
Target Start/End: Complemental strand, 4033120 - 4032982
Alignment:
Q  289 ttggagatcgtatcatataccccaagttacaaagtttaagtatcttcaatccatagtacatcatggaggataaatagaagca-acataaatcatcatatt 387  Q
    ||||||||| |||||||  ||||||||||||  |||||||||||||   | |||||||||  |||  ||| ||||| ||||| |  ||||||||||||||    
T  4033120 ttggagatcatatcata--ccccaagttacacggtttaagtatcttgggttcatagtacacaatgatggagaaataaaagcatatgtaaatcatcatatt 4033023  T
Q  388 cgagttgtgtggttgaaatgaagaaaagtctcaagtgtttt 428  Q
    | ||||| |||||||||||| |||| || |||| |||||||    
T  4033022 caagttgggtggttgaaatggagaagagcctcaggtgtttt 4032982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 15216187 - 15216001
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| | ||||||||   ||||| |||||| ||||||||||| |||||||||| |||||||| ||| | || || ||||||||||    
T  15216187 gattttcccataacaataggactgcaccaaggatcaaccctaagtccttatctttttactttagttttggatgtactgacagaacacatccaagagttag 15216088  T
Q  137 catcgaaatgtatg-cnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggag 222  Q
    || ||| |||||||         |||| |||||||| ||| |||| |||||||||||||| || | ||||||| ||||||| |||||    
T  15216087 caccgagatgtatgttttttttgcagacgatgtagtcttgtttggtgagtcgagggaggacttaagtgggaggctagagacctggag 15216001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 36544519 - 36544697
Alignment:
Q  38 gatttttccatcaaaatagaattgcaccaattgtcaactctaagttcttatcttttttctttagtttt-gatgtacttacaaagcatatgcaagagttag 136  Q
    |||||| |||| | ||||| ||||||||||  |||||| |||||||||||||||||| |||||||||| |||||| | |   | || || ||||||||||    
T  36544519 gattttcccataacaataggattgcaccaagggtcaaccctaagttcttatctttttactttagttttggatgtattgatgcaacacatccaagagttag 36544618  T
Q  137 catcgaaatgtatgcnnnnnnncagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagac 216  Q
    ||  || ||||||||       ||||||||||||| ||| | || ||||||||||||||| |||  |||||| |||||||    
T  36544619 cactgagatgtatgc-ttttttcagatgatgtagtcttggtgggtgagtcgagggaggaagtgaacgggaggctagagac 36544697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 604
Target Start/End: Complemental strand, 11395033 - 11394943
Alignment:
Q  512 aacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaa-caaacaaagagaaa 604  Q
    ||||||| |||||||||||||||||  ||| |  |||||||||||||||  ||||||||||| |||||||||||| |||  |||||||||||||    
T  11395033 aacaagccaaaatgaaattatattactaaaagcgatagcaatctcttag--caaggtgtgcc-aaaagaccactaacaataaaacaaagagaaa 11394943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 13984118 - 13984183
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    ||||||| |||||  ||||| |||||||||||||| |||||| ||| | |||||||||||||||||    
T  13984118 cagatgaagtagtcctgctttgagagtcgagggagaaattgaatggaaagttagagacttggagac 13984183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 28300895 - 28300833
Alignment:
Q  162 atgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    |||||||||| ||  |||||||||||| ||||||||||| || || ||| |||||||||||||    
T  28300895 atgatgtagtcttaattggagagtcgatggaggaattgaatgagatgttggagacttggagac 28300833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 18849764 - 18849698
Alignment:
Q  266 tagttttgccttagaagtaaaacttggagatcgtatcatataccccaagttacaaagtttaagtatctt 334  Q
    ||||| ||||||||| |||||| ||||||||| |||||||  ||||||||||||  |||||| ||||||    
T  18849764 tagttatgccttagaggtaaaaattggagatcatatcata--ccccaagttacacggtttaaatatctt 18849698  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 18849909 - 18849844
Alignment:
Q  159 cagatgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    ||||||||||||| ||| ||||||||| || ||||||||| |  || ||| |||||||||||||||    
T  18849909 cagatgatgtagtcttgtttggagagttgaaggaggaatttaacggtaggctagagacttggagac 18849844  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 13984774 - 13984830
Alignment:
Q  374 taaatcatcatattcgagttgtgtggttgaaatgaagaaaagtctcaagtgttttat 430  Q
    ||||||||| ||||  |||||  |||||||||||||||| || ||||||||||||||    
T  13984774 taaatcatcgtatttaagttggatggttgaaatgaagaagagcctcaagtgttttat 13984830  T

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Target: scaffold0707 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 511 - 603
Target Start/End: Original strand, 905 - 997
Alignment:
Q  511 gaacaagcgaaaatgaaattatattatcaaaggttatagcaatctcttagcacaaggtgtgcctaaaagaccactatcaacaaacaaagagaa 603  Q
    |||||||  |||||| |||||||||||||||||  |||| |||||||||| | | ||||||||||||||||||||| ||| | ||||||||||    
T  905 gaacaagtcaaaatgtaattatattatcaaaggcgatagtaatctcttagtatacggtgtgcctaaaagaccactaccaatatacaaagagaa 997  T

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Target: scaffold0286 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 292 - 230
Alignment:
Q  162 atgatgtagttttgcttggagagtcgagggaggaattgattgggaggttagagacttggagac 224  Q
    |||||||||| ||||||||| | |||||||||||||||| ||| |||||||||||||||||||    
T  292 atgatgtagtcttgcttggaaaatcgagggaggaattgaatggaaggttagagacttggagac 230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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