View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5293-Insertion-4 (Length: 235)
Name: NF5293-Insertion-4
Description: NF5293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5293-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 31952328 - 31952101
Alignment:
| Q |
8 |
tgacgggccctcatctggatcatgatgggacatttacttctatgcaaagatgagttgcaacatttaatatctatattctggataaatgatcagtgcacgt |
107 |
Q |
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| T |
31952328 |
tgacgggccctcatatggattatgatgggacatgtacttccatgcaaagatgagttgcaacattgaatatctatattatggataaatgatcagtgcacgt |
31952229 |
T |
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| Q |
108 |
gaaacttcatgcataaaattctgacaaacataaattccaatcagcatcatcacaatatgtagaaaatattatattacacaagttggtcatagaagaatat |
207 |
Q |
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| T |
31952228 |
gaaacttcatgcataaaattctgacaaacataaattccaatcagcatcatcacaatatgtagaaaatattatattacacaagttggtcatagaagaattt |
31952129 |
T |
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| Q |
208 |
gtaggcagtgacaacattaataataaag |
235 |
Q |
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| T |
31952128 |
gtaggcagtgacaacattaataataaag |
31952101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 31950265 - 31950486
Alignment:
| Q |
8 |
tgacgggccctcatctggatcatgatgggacatttacttctatgcaaagatgagttgcaacatttaatatctatattctggataaatgatcagtgcac-- |
105 |
Q |
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| T |
31950265 |
tgacgggccctcgtatggatcatgaggggacatgtacttccctgcaaagatgagttgcaacatttagtatctattttatggataaatgatcagtgcgcag |
31950364 |
T |
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| Q |
106 |
gtgaaacttcatgcataaaattctgacaaacataaattccaatcagcatcatcacaatatgtagaaaatattatattacacaagttggtcatagaagaat |
205 |
Q |
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| T |
31950365 |
gtgaaacttcaggcataaaattctgacaaacataaatcacaatcaacatcatcacaatatgtaaaagatattatattgcacaagttggtcatggaagatt |
31950464 |
T |
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| Q |
206 |
atgtaggcagtgacaacattaa |
227 |
Q |
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| T |
31950465 |
atgtaggcagtgacatcattaa |
31950486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 3497807 - 3497924
Alignment:
| Q |
8 |
tgacgggccctcatctggatcatgatgggacatttacttctatgcaaagatgagttgcaacatttaatatctatattctggataaatgatcagtgcacgt |
107 |
Q |
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|||| ||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| ||| |
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| T |
3497807 |
tgacaggctctcatctggatcatgaggggacatgtacttccctgcaaagatgagttgcaacttttagtatctattttctggataaatgatcagtgcgcgt |
3497906 |
T |
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| Q |
108 |
gaaacttcatgcataaaa |
125 |
Q |
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| T |
3497907 |
gaaacttcaggcataaaa |
3497924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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