View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5293_high_1 (Length: 637)

Name: NF5293_high_1
Description: NF5293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5293_high_1
NF5293_high_1
[»] chr2 (6 HSPs)
chr2 (18-627)||(42205307-42205924)
chr2 (29-464)||(42212506-42212943)
chr2 (530-598)||(18570971-18571040)
chr2 (561-611)||(12464872-12464922)
chr2 (541-598)||(14268735-14268793)
chr2 (566-596)||(18029593-18029623)
[»] chr8 (4 HSPs)
chr8 (564-627)||(14227192-14227255)
chr8 (564-615)||(37225769-37225820)
chr8 (561-611)||(10170409-10170459)
chr8 (564-596)||(40063952-40063984)
[»] chr5 (3 HSPs)
chr5 (539-627)||(28296298-28296387)
chr5 (561-624)||(9878055-9878118)
chr5 (534-596)||(9055569-9055631)
[»] chr7 (1 HSPs)
chr7 (538-596)||(2525843-2525902)
[»] chr1 (4 HSPs)
chr1 (564-623)||(10475003-10475062)
chr1 (530-596)||(19637769-19637836)
chr1 (573-627)||(17831566-17831620)
chr1 (574-626)||(3490426-3490478)
[»] chr4 (2 HSPs)
chr4 (561-611)||(2796532-2796582)
chr4 (564-596)||(19195188-19195220)
[»] chr3 (4 HSPs)
chr3 (541-606)||(18268007-18268073)
chr3 (564-626)||(52067067-52067129)
chr3 (530-586)||(23271985-23272042)
chr3 (564-596)||(33548843-33548875)
[»] chr6 (1 HSPs)
chr6 (526-625)||(7377951-7378051)


Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Original strand, 42205307 - 42205924
Alignment:
Q  18 tttggaaatgatcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205307 tttggaaatgatcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctc 42205406  T
Q  118 atcttacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttatttggtaccaagttttaagta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205407 atcttacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttatttggtaccaagttttaagta 42205506  T
Q  218 caaaaagtatcacatataagataggatatgatatgtgatcaatcagaaatatgtgtaaataaatagataataaaaccttaattaggtgaatttgtaacac 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42205507 caaaaagtatcacatataagataggatatgatatgtgatcaatcagaaatatgtgtgaataaatagataataaaaccttaattaggtgaatttgtaacac 42205606  T
Q  318 gatgatatcaatttcacactgaattcatgtgtaatttgcttgtttgatgaatatttcacagctttatttgcacttttgattgattattttttctagttgt 417  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42205607 gatgatatccatttcacactgaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttgattgattattttttctagttgt 42205706  T
Q  418 gatatgatatcttaatccaacctatcctatacttcacagttagttccctgnnnnnnnaattattattctatatgaagcacctttactccttggattaggc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  42205707 gatatgatatcttaatccaacctatcctatacttcacagttagttccctgcttttttaattattattctatatgaagcacctttactccttggattaggc 42205806  T
Q  518 gtgttcggtg-------catatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatg 609  Q
    ||||||||||       ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42205807 gtgttcggtgtcagatacatatcgtgtccggcaccgacacatatgattattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatg 42205906  T
Q  610 tcgtgtccggtgtctgtg 627  Q
    ||||||||||||||||||    
T  42205907 tcgtgtccggtgtctgtg 42205924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 29 - 464
Target Start/End: Original strand, 42212506 - 42212943
Alignment:
Q  29 tcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctcatc---ttacg 125  Q
    ||||||||||||||||| | ||  |||||| || ||||| |||| || ||||||||||||||||||||||||||||||||||| || |||||   ||| |    
T  42212506 tcttatagatttatgaaaaggactttggaactt-gttaagttgcgaaatcaattcgatgacatgaatatgttattagctcggtaagttcatctaattatg 42212604  T
Q  126 caaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttat---ttggtaccaagttttaagtacaaaa 222  Q
    || |||||||||| |||||||||||||||||||||| ||||||||||  ||  ||| || || ||||| |||   |||||||| ||||||||||||||||    
T  42212605 cagatctactgagtattgatcatcaatttgtgaatt-ttttgttttg-gtagaatcatacgacgaattctatttattggtacctagttttaagtacaaaa 42212702  T
Q  223 agtatcacatataagataggatatgatatgtgatcaatcagaaatatgtgtaaataaatagataataaaaccttaattaggtgaatttgtaacacga--- 319  Q
    || ||||||||||||||||||||||| |  | ||||||   |||||||||| |||||||||||| ||||| |     ||||||||||||||||| ||       
T  42212703 agcatcacatataagataggatatgaca--taatcaat---aaatatgtgtgaataaatagatagtaaaaac---cataggtgaatttgtaacatgatgt 42212794  T
Q  320 ----tgatatcaatttcacactg-aattcatgtgtaatttgcttgtttgatgaatatttcacagctttatttgcactttt-gattgattattttttctag 413  Q
        || |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||       
T  42212795 taattgttatccatttcacactgcaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttttagattgattaatttttcccc 42212894  T
Q  414 ttgtgatatgatatcttaatccaacctatcctatacttcacagttagttcc 464  Q
    |   | | || |||||||||||||| |||||||||||| |||||| |||||    
T  42212895 t--agctgtgctatcttaatccaacttatcctatactttacagtttgttcc 42212943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 598
Target Start/End: Complemental strand, 18571040 - 18570971
Alignment:
Q  530 tatcgtgtccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttg 598  Q
    |||||||| |||||| |||||||||||| |  || ||||| ||||||||||||||||||||| |||||||    
T  18571040 tatcgtgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttg 18570971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 611
Target Start/End: Original strand, 12464872 - 12464922
Alignment:
Q  561 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 611  Q
    |||||| | ||||||||||||||||||||||||||| ||| ||||| ||||    
T  12464872 ttcaatcatgtcattttctcaaattattattggtgtcggcgtgtcagtgtc 12464922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 598
Target Start/End: Original strand, 14268735 - 14268793
Alignment:
Q  541 acaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttg 598  Q
    |||||||||||||| || |  |||||||||||||||||||||||||||||  |||||||    
T  14268735 acaccgacacatatcattacgttcaattaagtcattttctcaaattattaccggtgttg 14268793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 596
Target Start/End: Original strand, 18029593 - 18029623
Alignment:
Q  566 ttaagtcattttctcaaattattattggtgt 596  Q
    |||||||||||||||||||||||||||||||    
T  18029593 ttaagtcattttctcaaattattattggtgt 18029623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 564 - 627
Target Start/End: Complemental strand, 14227255 - 14227192
Alignment:
Q  564 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 627  Q
    ||||| || |||||||||||||||||||||||||| | ||||| || ||||||| |||||||||    
T  14227255 aattatgttattttctcaaattattattggtgttgacgtgtcagtgacgtgtccagtgtctgtg 14227192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 615
Target Start/End: Original strand, 37225769 - 37225820
Alignment:
Q  564 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgt 615  Q
    ||||| || |||||||||||||||||||||||| | |||||| |||||||||    
T  37225769 aattatgttattttctcaaattattattggtgtagacatgtctatgtcgtgt 37225820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 611
Target Start/End: Original strand, 10170409 - 10170459
Alignment:
Q  561 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 611  Q
    ||||||||| | |||||||||||||||||||||||||| | || |||||||    
T  10170409 ttcaattaatttattttctcaaattattattggtgttgacgtgccaatgtc 10170459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 596
Target Start/End: Complemental strand, 40063984 - 40063952
Alignment:
Q  564 aattaagtcattttctcaaattattattggtgt 596  Q
    ||||| |||||||||||||||||||||||||||    
T  40063984 aattatgtcattttctcaaattattattggtgt 40063952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 627
Target Start/End: Complemental strand, 28296387 - 28296298
Alignment:
Q  539 cgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 627  Q
    ||||||| |||||||||| ||  || ||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||  |||||||||    
T  28296387 cgacaccaacacatatgagtacattgaattatgtcattttctcaaattattatcggtgtcgacttgtccatgtcgtgtcttgtgtctgtg 28296298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 561 - 624
Target Start/End: Original strand, 9878055 - 9878118
Alignment:
Q  561 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtct 624  Q
    ||||||||| |||| ||||||||||||||||||||| | | ||||| |||| ||| ||||||||    
T  9878055 ttcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcttgttcggtgtct 9878118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 596
Target Start/End: Complemental strand, 9055631 - 9055569
Alignment:
Q  534 gtgtccgacaccgacacatatgatattttcaattaagtcattttctcaaattattattggtgt 596  Q
    |||| ||||||||||||||||||||  ||| |||| | |||||| |||||||| |||||||||    
T  9055631 gtgttcgacaccgacacatatgatacattctattatgccattttttcaaattactattggtgt 9055569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 596
Target Start/End: Original strand, 2525843 - 2525902
Alignment:
Q  538 ccgacaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgt 596  Q
    |||||||||||||||||||| || || ||||| ||||||| ||||||||||||| |||||    
T  2525843 ccgacaccgacacatatgattatattgaattatgtcatttgctcaaattattatcggtgt 2525902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 623
Target Start/End: Original strand, 10475003 - 10475062
Alignment:
Q  564 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtc 623  Q
    ||||| || |||||||||| ||||||  ||||| ||| ||||||||||||||||||||||    
T  10475003 aattatgtgattttctcaagttattagcggtgtcggcgtgtcaatgtcgtgtccggtgtc 10475062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 596
Target Start/End: Complemental strand, 19637836 - 19637769
Alignment:
Q  530 tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgt 596  Q
    ||||||||||||||||||||||||||| ||  || ||| | |||||||||| |||||||||| |||||    
T  19637836 tatcgtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgt 19637769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 627
Target Start/End: Original strand, 17831566 - 17831620
Alignment:
Q  573 attttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgtg 627  Q
    |||||||||||||||||  ||||| ||| ||||| |||||| |||||||||||||    
T  17831566 attttctcaaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtg 17831620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 626
Target Start/End: Original strand, 3490426 - 3490478
Alignment:
Q  574 ttttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgt 626  Q
    ||||||||||||||||   |||| ||| ||||| |||||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtccggtgtctgt 3490478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 611
Target Start/End: Complemental strand, 2796582 - 2796532
Alignment:
Q  561 ttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtc 611  Q
    ||||||||| ||||||||||||||||||| ||||||||   ||||||||||    
T  2796582 ttcaattaattcattttctcaaattattaatggtgttgaagtgtcaatgtc 2796532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 596
Target Start/End: Original strand, 19195188 - 19195220
Alignment:
Q  564 aattaagtcattttctcaaattattattggtgt 596  Q
    ||||| |||||||||||||||||||||||||||    
T  19195188 aattacgtcattttctcaaattattattggtgt 19195220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 606
Target Start/End: Original strand, 18268007 - 18268073
Alignment:
Q  541 acaccgacacatatgat-attttcaattaagtcattttctcaaattattattggtgttggcatgtca 606  Q
    |||||||||||| |||| |  ||||||||| ||||||||||||||||||||  |||||| |||||||    
T  18268007 acaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgttgacatgtca 18268073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 564 - 626
Target Start/End: Complemental strand, 52067129 - 52067067
Alignment:
Q  564 aattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtctgt 626  Q
    |||||| ||||||||| |||||||||||||| | | | ||||| ||| |||||||||||||||    
T  52067129 aattaattcattttcttaaattattattggtatcgacgtgtcagtgttgtgtccggtgtctgt 52067067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 23271985 - 23272042
Alignment:
Q  530 tatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaatta 586  Q
    |||||||||| |||||||||||||||| ||  |||||||| |||| ||||||||||||    
T  23271985 tatcgtgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 596
Target Start/End: Complemental strand, 33548875 - 33548843
Alignment:
Q  564 aattaagtcattttctcaaattattattggtgt 596  Q
    ||||||||||||||||||||||||||| |||||    
T  33548875 aattaagtcattttctcaaattattatcggtgt 33548843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 625
Target Start/End: Complemental strand, 7378051 - 7377951
Alignment:
Q  526 tgcatatcgtgtccgacaccgacacatatga-tattttcaattaagtcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgtct 624  Q
    ||||| ||||||||||||||||||||||| | ||  || ||||| || ||||||||||||| |||  ||||| ||  ||||  ||| |||||||||||||    
T  7378051 tgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgattttctcaaatttttagcggtgtcggggtgtctgtgttgtgtccggtgtct 7377952  T
Q  625 g 625  Q
    |    
T  7377951 g 7377951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University