View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5293_high_3 (Length: 441)
Name: NF5293_high_3
Description: NF5293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5293_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 31952324 - 31952747
Alignment:
| Q |
7 |
cgtcaatcacagagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattca |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
31952324 |
cgtcagtcacagagtggagagtccaacgatgggaatcatcttcccagcatgttgtcatccatccaatatttggaagttttcatggaaatcctgatattca |
31952423 |
T |
|
| Q |
106 |
aatggtttgggagtccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgttttaattttctgatagatcttggg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
31952424 |
aatggtttgggagtccaaagtggacattagtattccggcaacaaacgataagtcaaaagagatccatttcaatcgttttaattttctgatagatcttggg |
31952523 |
T |
|
| Q |
206 |
accctcgcacgagttgtttactcagctcaaggaggtgaaattgtcgttgcttttctttacggtggaatccacatattttctggtttgacttttacacatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31952524 |
accctcgcacgagttgtttactcagctcaaggtggtgaaattgtcgttgcttttctttacggtggaatccacatattttctggtttgacttttacacatg |
31952623 |
T |
|
| Q |
306 |
tagccaaatatcatattagtgttggatcatcaagtgctattcttgctttttctacaactagctattggtcagcttctgcttggcatgacacaaacaaggg |
405 |
Q |
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||||||| ||||| |||| |||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31952624 |
tagccaactatcagattaatgttggatcatcaattgctattcttgttttttctgcaactagctattgttcagcttctgcttggcatgacacaaacaaggg |
31952723 |
T |
|
| Q |
406 |
tgatcccatgttgaaaataatctg |
429 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
31952724 |
tgatcccatgttgaaaataatctg |
31952747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 7 - 427
Target Start/End: Complemental strand, 31950269 - 31949848
Alignment:
| Q |
7 |
cgtcaatcacagagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattca |
105 |
Q |
| |
|
||||||||| || ||||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | | ||| |
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|
| T |
31950269 |
cgtcaatcatagggtggagagtccaatgatgggaatcatctttccaacatgttgtcctccatccaatatttggaagttttcatggaaagcctcctatgtg |
31950170 |
T |
|
| Q |
106 |
aatggtttgggagtccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgttttaattttctgatagatcttggg |
205 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| || ||||| | ||||||||||| ||||||||||||||| |||| || ||| |||||||||||| |
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|
| T |
31950169 |
aatggtttaggagtccaaagtggacattagtattccggcaacacatgataagtcaaaaaggatccatttcaatcattttgatcttccaatagatcttggg |
31950070 |
T |
|
| Q |
206 |
accctcgcacgagttgtttactcagctcaaggaggtgaaattgtcgttgcttttctttacggtggaatccacatattttctggtttgacttttacacatg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| | |
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|
| T |
31950069 |
accctcgcacgagttgtttactcagctcaagatggtgaaattgtcgttgcttttcttcatggtggaatccacatattttcttgtttgacttttacacctt |
31949970 |
T |
|
| Q |
306 |
tagccaaatatcatattagtgttggatcatcaagtgctattcttgctttttctacaactagctattggtcagcttctgcttggcatgacacaaacaaggg |
405 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||| || ||| | ||||||||||||| | | ||| |||||||||| |||||||| |||||||||||| |
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|
| T |
31949969 |
tagccaactatcagattaatgttggatcatcaattgtcgttcctactttttctacaacatgttgttgttcagcttctgtttggcatggcacaaacaaggg |
31949870 |
T |
|
| Q |
406 |
tgatcccatgttgaaaataatc |
427 |
Q |
| |
|
||| ||||||||||||||||| |
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|
| T |
31949869 |
tgaggccatgttgaaaataatc |
31949848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 427
Target Start/End: Complemental strand, 3497810 - 3497390
Alignment:
| Q |
8 |
gtcaatcacagagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaa |
106 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||| | ||||||||| | ||| | |
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|
| T |
3497810 |
gtcaatcacagggtggagagtccaacgatgggaatcatctttccagcctgttgtcctcaatccaatatttggaagtatggatggaaatcctcctatgcgt |
3497711 |
T |
|
| Q |
107 |
atggtttgggagtccaaagtggacattagtatttcgacaacagacgataagtcaaaggggatccatttcaatcgttttaattttctgatagatcttggga |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |||| || ||| | | ||||||||| |
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|
| T |
3497710 |
acggtttgggagtccaaagtggacattagtataccagcaacagacgataagtcaaaagggatccatttcaatccttttgatcttccaaaatatcttggga |
3497611 |
T |
|
| Q |
207 |
ccctcgcacgagttgtttactcagctcaaggaggtgaaattgtcgttgcttttctttacggtggaatccacatattttctggtttgacttttacacatgt |
306 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||| |||||||||| || | || | | | |||||||||||||| || |||| || ||| |
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|
| T |
3497610 |
ccctcgcacgagttgttttctcagctcaaggtggtgaaattgccgttgctttttttcaaggccgggtacgcatattttctggttcgaattttgaacctgt |
3497511 |
T |
|
| Q |
307 |
agccaaatatcatattagtgttggatcatcaagtgctattcttgctttttctacaactagctattggtcagcttctgcttggcatgacacaaacaagggt |
406 |
Q |
| |
|
| |||| ||| | |||| |||||||||||||| | || ||| |||||||||| |||| |||| || |||||||||| |||||||||||||| ||||||| |
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|
| T |
3497510 |
aaccaactatgagattaatgttggatcatcaatttctgttcctgctttttctgcaacaagctgctgttcagcttctgtttggcatgacacaagcaagggt |
3497411 |
T |
|
| Q |
407 |
gatcccatgttgaaaataatc |
427 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
3497410 |
gaggccatgctgaaaataatc |
3497390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 43236805 - 43236946
Alignment:
| Q |
8 |
gtcaatcacagagtggagagtccaacgaagggaatcatctttccagcatgttgtcctccatccaat-tttggaagttttcatggaaatcttgatattcaa |
106 |
Q |
| |
|
||||||| ||| ||||||| |||||| | | ||||||| |||||||| |||||||||||||||||| ||| |||||||||| | ||| | | ||| | | |
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|
| T |
43236805 |
gtcaatctcagggtggagaatccaacaatgagaatcatttttccagcttgttgtcctccatccaatattttgaagttttcacgtaaagcctcctatgcga |
43236904 |
T |
|
| Q |
107 |
atggtttgggagtccaaagtggacattagtatttcgacaaca |
148 |
Q |
| |
|
| |||||||| |||||||||||||||||| ||| || ||||| |
|
|
| T |
43236905 |
acggtttgggggtccaaagtggacattagcattccggcaaca |
43236946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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