View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5293_low_3 (Length: 510)
Name: NF5293_low_3
Description: NF5293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5293_low_3 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 107 - 491
Target Start/End: Complemental strand, 49237 - 48853
Alignment:
| Q |
107 |
ttctaatttattatagcgattaacaatctaaagttacagttctaaggtttggtgctcattctaattctacaaatctcaaaagtgtcgttaagtatctaga |
206 |
Q |
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| T |
49237 |
ttctaattgattatagcgattaacaatctaatgttacagttctgaggtttggtgctcatcctaattctacaaatctcaaaagtgtcgttaagtatctaga |
49138 |
T |
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| Q |
207 |
taattaatcatgtgatttaaatcgagcaacgatgttaaatcaagttcaattctctagtttctgatcctaactcatttggaatcatatcatttagcacttt |
306 |
Q |
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| T |
49137 |
taattaatcatgtgagttaaatcgagcaacgatgttaaatcaagttcaattctctagtttctgatcctaactcatttggaatcatatcatttagcacttt |
49038 |
T |
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| Q |
307 |
aggatagtctaatccattaggcccttgcaatctctgcaagcacctaacaaagggatctaatcgattagaaaagggacactaaatcgattggagatcaata |
406 |
Q |
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| T |
49037 |
aggatagtctaatccattaggaccttgcaatctctgcaagcacctaacaaagggatctaatcaattagaaaagggacactaaatcgattggagatcaata |
48938 |
T |
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| Q |
407 |
atctcttaaaacaagttcctaaaagatgtgatacatttgcttggtcgattatcaaaccatagaaacatcgaagatatgtacgagg |
491 |
Q |
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| T |
48937 |
atctcttaaaacaagttcctaaaagatgtgatacatttgcttggtcgattatcaaaccatagaaacatcgaagatatgtacgagg |
48853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 49300 - 49236
Alignment:
| Q |
21 |
agtaatccttgatattacaatacaaagccacatgtctatcaccgttaaattatgcattgcaagtt |
85 |
Q |
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| T |
49300 |
agtaatccttgatgttacaatacaaagccacatgtctatcactgttaaattatgcattgcaagtt |
49236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 276 - 346
Target Start/End: Original strand, 31525295 - 31525365
Alignment:
| Q |
276 |
actcatttggaatcatatcatttagcactttaggatagtctaatccattaggcccttgcaatctctgcaag |
346 |
Q |
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| T |
31525295 |
actcgtttggaatcatatcatttagcactttagcattgtctaatccattaggcccttgcaatctctgcaag |
31525365 |
T |
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