View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5293_low_5 (Length: 412)
Name: NF5293_low_5
Description: NF5293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5293_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 398
Target Start/End: Complemental strand, 26384351 - 26383960
Alignment:
| Q |
7 |
aacaaagttggaaaaccaaacatggaggtagtggttccaaatcaatttaggtgtcctataactcttgatttgatgaaagatcctgtgacattgtcaacag |
106 |
Q |
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| T |
26384351 |
aacaaaggtggaaaaccaaacatggaggtagtggttccaaatcaatttaggtgtcctataactcttgatttgatgaaagatcctgtgacattgtcaacag |
26384252 |
T |
|
| Q |
107 |
gaataacctatgatagagagagtgttgaaagatggttcaatgaaggaaactatacatgtcctctcacaaatcaagtagtgagaaactttgacatgattcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26384251 |
gaataacctatgatagagagagtgttgaaagatggttcaatgaaggaaactatacatgtcctctcacaaatcaagtagtgagaaactttgacatgattcc |
26384152 |
T |
|
| Q |
207 |
aaatcattctcttaggataatgattcaagattggtgtgttgaaaatagacaaaatggtgttgagaggattccaactcctagaataccaattagtccgatc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26384151 |
aaatcattctcttaggataatgattcaagattggtgtgttgaaaatagacaaaatggtgttgagaggattccaactcctagaataccaattagtccgatc |
26384052 |
T |
|
| Q |
307 |
gatgtttccgagcttctttttcgagttaaagaatcagcaaaaggtttggatcaatatggttgtattggattggttcaaaaaatggagaaatg |
398 |
Q |
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| T |
26384051 |
gatgtttccgagcttctttttcaagttaaagaatcagcaaaaggtttggatcaatatggttgtattggattggttcaaaaaatggagaaatg |
26383960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 398
Target Start/End: Original strand, 21036393 - 21036784
Alignment:
| Q |
7 |
aacaaagttggaaaaccaaacatggaggtagtggttccaaatcaatttaggtgtcctataactcttgatttgatgaaagatcctgtgacattgtcaacag |
106 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
21036393 |
aacaaaggtggaaaaccaaacatggaggtagtggttccaaatcaatttaggtgtcctattacacttgaattgatgaaagatcctgtgacattgtcaacag |
21036492 |
T |
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| Q |
107 |
gaataacctatgatagagagagtgttgaaagatggttcaatgaaggaaactatacatgtcctctcacaaatcaagtagtgagaaactttgacatgattcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21036493 |
gaataacctatgatagagagagtgttgaaagatggttcaatgaaggaaactatacatgtcctctcacaaatcaagttgtgagaaactttgacatgattcc |
21036592 |
T |
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| Q |
207 |
aaatcattctcttaggataatgattcaagattggtgtgttgaaaatagacaaaatggtgttgagaggattccaactcctagaataccaattagtccgatc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| || |
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| T |
21036593 |
aaatcattctcttaggataatgattcaagattggtgtgttgaaaatagacaaaatggtgttgagaggattcctactccaagaataccgattagtccactc |
21036692 |
T |
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| Q |
307 |
gatgtttccgagcttctttttcgagttaaagaatcagcaaaaggtttggatcaatatggttgtattggattggttcaaaaaatggagaaatg |
398 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21036693 |
gatgtttctgagcttctttttcgagttaaggaatcagcaaaaggtttggatcaatatggttgtattggattggttcaaaaaatggagaaatg |
21036784 |
T |
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