View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294-Insertion-1 (Length: 545)
Name: NF5294-Insertion-1
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 229 - 534
Target Start/End: Complemental strand, 37863936 - 37863631
Alignment:
| Q |
229 |
gaaaattaggctcgcctccccaaaacaacacaaacaccttctctagttttgtactagacactaacctccactaagttattctataatagacaaacacatc |
328 |
Q |
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| T |
37863936 |
gaaaattaggctcgcccgcccaaaacaacacaaacaccttctctagttttgtactagacactaacctccactaagttattctataatagacaaacacatc |
37863837 |
T |
|
| Q |
329 |
ccttaacacaattattattctgttaatttcttttcttccctatttccattttccatcgtttgtgacatggagtttcgcttcagagttgttgcaccttgca |
428 |
Q |
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| T |
37863836 |
ccttaacaccattattattctgttaatttcttttcttccctatttccattttccatcgtttgtgacatggagtttcgcttcagagttgttgcaccttgca |
37863737 |
T |
|
| Q |
429 |
agtatcacaacgtcaacataaattattattnnnnnnnnnctcacaacaatagcgagtaaattctgaaaattgtaatcagtcttattctttcttcacccac |
528 |
Q |
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| T |
37863736 |
agaatcacaacgtcaacataaattattattaaaaaaaaactcacaacaatagcgagtaaattctgaaaattgtaattagtcttattctttcttcacccac |
37863637 |
T |
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| Q |
529 |
acccac |
534 |
Q |
| |
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|||||| |
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| T |
37863636 |
acccac |
37863631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 37865048 - 37864837
Alignment:
| Q |
8 |
gttttctcctcgttctaaaaattaaaactacttaccgaaccagttgtacaattttaacccatcaatggcatgaaccacttaatcatatacgaccttaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37865048 |
gttttctcctcgttctaaaaattaaaactacttaccgaaccagttgtacaattttaacccatcaatggcatgaaccacttaatcatatacgaccttaaaa |
37864949 |
T |
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| Q |
108 |
ctaaaaattagaactaataatatgcaattagatacgactctgaggtacaaatatttagtaactgaaacatcttaagtaagattaagttcgattgattgaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37864948 |
ctaaaaattagaactaataatatgcaattagatacgactctgaggtacaaatatttagtaactgaaacatcttaaataagattaagttcgattgattgaa |
37864849 |
T |
|
| Q |
208 |
cctatatcaaat |
219 |
Q |
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|| ||||||||| |
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| T |
37864848 |
ccgatatcaaat |
37864837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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