View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294-Insertion-3 (Length: 244)
Name: NF5294-Insertion-3
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 37468732 - 37468497
Alignment:
| Q |
7 |
acaattaacaacgaaatctcgtctcataagtcaaattccacttatagaaatcatgaattagcgaaaaaacaaacgaatgcnnnnnnnnnnntcttcaatt |
106 |
Q |
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| T |
37468732 |
acaattaacaacgaa-tctcgtctcataagtcaaattccacttatagaaatcatgaattagcgaaaaa-caaacgaatgcaaaaaaaaaaatcttcaatt |
37468635 |
T |
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| Q |
107 |
cagaaaatcgttaccatgaagcagttccaaggccactctgttccatcctctctcataatctttggcctcgaaatcccccaataactcgacgcaaccacgt |
206 |
Q |
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| T |
37468634 |
cagaaaatcgttaccatgaagcagttccaaggccactcagttccatcctctctcataatctttggcctcgaaatcccccaataactcgacgcaaccacgt |
37468535 |
T |
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| Q |
207 |
tattcttcgttccggaactctcctccttcttcttctcg |
244 |
Q |
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| T |
37468534 |
tattcttcgttccggaactctcctccttcttcttctcg |
37468497 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 29935532 - 29935568
Alignment:
| Q |
117 |
ttaccatgaagcagttccaaggccactctgttccatc |
153 |
Q |
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| T |
29935532 |
ttaccatgaagcagttccatggccactcagttccatc |
29935568 |
T |
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