View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_high_1 (Length: 794)
Name: NF5294_high_1
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_high_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 146 - 794
Target Start/End: Original strand, 49411917 - 49412556
Alignment:
| Q |
146 |
gcaagagttgaaattgttggtctaatatggttaatggcatgtttgtggggaacggcaaaaactccactaactcggcatccaaggctcttggaattttcat |
245 |
Q |
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| T |
49411917 |
gcaagagttgaaattgttggtctaatatggttaatggcatgtttgtggggaacggcaaaaactccactaactcggcatccaaggctcttggaattttcat |
49412016 |
T |
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| Q |
246 |
attgaatttttgatggtttgaaaggcaaaaaattgtagggttttgatggggtttgtttgtcattgtatgtgaacatgggttgtgttgtgggagtagaaaa |
345 |
Q |
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| T |
49412017 |
attgaatttttgatggtttgaaaggcaaaaaattgtagggttttgatggggtttgtttgtcattgtatgtgaacatgggttgtgttgtgggagtagaaaa |
49412116 |
T |
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| Q |
346 |
ttggtgtttaagtatttatcactaagctcaacaaagaagcttttatgggcaactttttggatttattaccttattattgatattgaaggttgggaaagga |
445 |
Q |
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| T |
49412117 |
ttggtgtttaagtatttatcactaagctcaacaaagaagcttttatgggcaactttttggatttattaccttattattgatattgaaggttgggaaagga |
49412216 |
T |
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| Q |
446 |
aagattatgcgtagtgtgtagtggggcattaaccttgattggagtgaatggatatgggggcgggtgattggcccaagatgcagctaaccccaccaatttg |
545 |
Q |
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| T |
49412217 |
aagattatgcgtagtgtgtagtggggcattaaccttgattggagtgaatggatatgggggcgggtgattggcccaagatgcagctaaccccaccaatttg |
49412316 |
T |
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| Q |
546 |
tgcatccaattttacgcggatgattgagtaatgagcaccaaattcttctatcattaatacttatctcaattcattgttttnnnnnnnnnnnnnnntcact |
645 |
Q |
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| T |
49412317 |
tgcatccaattttacgcggatgattgagtaatgagcaccaaattcttctatcattaatacttatctcaattcattgtttt----aaaaaacaaaatcact |
49412412 |
T |
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| Q |
646 |
atttacaataatttggagttagtccatacagaaatcaagtgtttattgctnnnnnnnnnnnnnnnnnnntcaagtgtttatgccattatgttaaaatttt |
745 |
Q |
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| T |
49412413 |
atttacaataatttggagttagttcatacagaaatcaagtgtttattgct-----aaaaaaaaaagaaatcaagtgtttatgccattatgttaaaatttt |
49412507 |
T |
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| Q |
746 |
gaagctcattagggcattcatggttaagcataggattgtctctattcat |
794 |
Q |
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| T |
49412508 |
gaagctcattagggcgttcatggttaagcatatgattgtctctattcat |
49412556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 49411786 - 49411827
Alignment:
| Q |
15 |
tagggacaaggggagacatgatgggccgtatataaaggcgaa |
56 |
Q |
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| T |
49411786 |
tagggacaaggggagacatgatgggtcgtatataaaggcgaa |
49411827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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