View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_high_13 (Length: 447)

Name: NF5294_high_13
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_high_13
NF5294_high_13
[»] chr2 (9 HSPs)
chr2 (17-447)||(39124551-39124982)
chr2 (23-178)||(39130531-39130686)
chr2 (23-172)||(39494460-39494609)
chr2 (195-297)||(39130745-39130848)
chr2 (26-167)||(39143584-39143725)
chr2 (23-172)||(39426581-39426730)
chr2 (195-242)||(39426469-39426516)
chr2 (195-230)||(39494360-39494395)
chr2 (346-412)||(39426282-39426347)


Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Original strand, 39124551 - 39124982
Alignment:
Q  17 aggccaaatgcaggagctgaagcgttttgtaagccaaatggagaattttaaatcagaacagaaacaattagaaggacgatggaaagagctcgagtcagaa 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39124551 aggccaaatgcaggacctgaagcgttttgtaagccaaatggagaattttaaatcagaacagaaacaattagaaggacgatggaaagagctcgagtcagaa 39124650  T
Q  117 gacaaggagttcaaagtacatgctaaggagcttgagccaatagagaagcagtttgatggatgtgtgaaggatgttgatttaagagagaaacaatatgatg 216  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39124651 gagaaggagttcaaagtacatgctaaggagcttgagccaatagagaagcagtttgatggatgtgtgaaggatgttgatttaagagagaaacaatatgatg 39124750  T
Q  217 ctttaatagaaccatccgatgaagaagcatatttgggtaaatgttctttttacttagtttttgaaacaatttcatttcaactg-nnnnnnnnaatggtgt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||         ||||||||    
T  39124751 ctttaatagaaccatccgatgaagaagcatatttgggtaaatgttctttttacttagtttttgaaacaatttcattgcaactgtttttttttaatggtgt 39124850  T
Q  316 agatatttaattatccgatctacctatttctttaattatgttcatgttgtaggtcttagccaagttgaaaatcttcacttgttttcaatatcagacaatg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39124851 agatatttaattatccgatctacctatttctttaattatgttcatgttgtaggtcttagccaagttgaaaatcttcacttgttttcaatatcagacaatg 39124950  T
Q  416 ttgtaggtcttactaatttggattacattttt 447  Q
    ||||||||||||||||||||||||||||||||    
T  39124951 ttgtaggtcttactaatttggattacattttt 39124982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 39130531 - 39130686
Alignment:
Q  23 aatgcaggagctgaagcgttttgtaagccaaatggagaattttaaatcagaacagaaacaattagaaggacgatggaaagagctcgagtcagaagacaag 122  Q
    |||||||||||| |||||||||||||||||||||||   ||| || |||||| |||||||||| | ||||||| |||||||||  |||||||||||||||    
T  39130531 aatgcaggagctcaagcgttttgtaagccaaatggatggtttcaattcagaagagaaacaatttgcaggacgagggaaagagccagagtcagaagacaag 39130630  T
Q  123 gagttcaaagtacatgctaaggagcttgagccaatagagaagcagtttgatggatg 178  Q
     | ||||||||||||   ||||| ||| |||||| ||||||||||||||| |||||    
T  39130631 aaattcaaagtacatttgaaggatcttaagccaaaagagaagcagtttgagggatg 39130686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 39494609 - 39494460
Alignment:
Q  23 aatgcaggagctgaagcgttttgtaagccaaatggagaattttaaatcagaacagaaacaattagaaggacgatggaaagagctcgagtcagaagacaag 122  Q
    ||||||| | || ||| |||||||||||||||||||| |||| ||||| ||| |||||||||| ||||||||| |||||||||  |||||| ||||||||    
T  39494609 aatgcagaatctcaagggttttgtaagccaaatggaggatttcaaatcggaagagaaacaatttgaaggacgagggaaagagccagagtcaaaagacaag 39494510  T
Q  123 gagttcaaagtacatgctaaggagcttgagccaatagagaagcagtttga 172  Q
     ||||||||| ||| |  ||||||||  |||||| |||||||||||||||    
T  39494509 aagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttga 39494460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 39130745 - 39130848
Alignment:
Q  195 ttaagagagaaacaatatgatgctttaatagaaccatccgatgaagaagcatatttgggtaaatgttcttttt-acttagtttttgaaacaatttcattt 293  Q
    ||||||||||||||||||||| ||||||||||||||| | || ||||| || | ||||||||||||||||||| | |||||||| |||||||||||||||    
T  39130745 ttaagagagaaacaatatgattctttaatagaaccattccatcaagaaacagaattgggtaaatgttctttttcatttagttttggaaacaatttcattt 39130844  T
Q  294 caac 297  Q
    ||||    
T  39130845 caac 39130848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 39143584 - 39143725
Alignment:
Q  26 gcaggagctgaagcgttttgtaagccaaatggagaattttaaatcagaacagaaacaattagaaggacgatggaaagagctcgagtcagaagacaaggag 125  Q
    |||| |||| ||| |||||||||||||||||||  |||| ||||||||| ||||||| || ||||||||| ||||||||||| ||||| | || |||  |    
T  39143584 gcagaagctcaagggttttgtaagccaaatggaagatttgaaatcagaagagaaacattttgaaggacgagggaaagagctcaagtcaaacgataagatg 39143683  T
Q  126 ttcaaagtacatgctaaggagcttgagccaatagagaagcag 167  Q
    ||||||||| |||| |||| |||  | |||| ||||||||||    
T  39143684 ttcaaagtagatgcgaaggtgctcaatccaaaagagaagcag 39143725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 39426730 - 39426581
Alignment:
Q  23 aatgcaggagctgaagcgttttgtaagccaaatggagaattttaaatcagaacagaaacaattagaaggacgatggaaagagctcgagtcagaagacaag 122  Q
    ||||||||| || |||||||||| ||||||||||||| ||||| | |||||| | | |||||| |||||||   ||||||||   || ||||||||||||    
T  39426730 aatgcaggaactcaagcgttttgcaagccaaatggaggatttttattcagaagaaatacaatttgaaggacaggggaaagagactgaatcagaagacaag 39426631  T
Q  123 gagttcaaagtacatgctaaggagcttgagccaatagagaagcagtttga 172  Q
     | ||||||||||| |  ||||||||  |||||| |||||||||||||||    
T  39426630 aacttcaaagtacacgagaaggagctcaagccaaaagagaagcagtttga 39426581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 39426516 - 39426469
Alignment:
Q  195 ttaagagagaaacaatatgatgctttaatagaaccatccgatgaagaa 242  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||    
T  39426516 ttaagagagaaacaatatgatgctttaatagaaccatttgatgaagaa 39426469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 39494395 - 39494360
Alignment:
Q  195 ttaagagagaaacaatatgatgctttaatagaacca 230  Q
    |||||||||||| |||||||||||||||||||||||    
T  39494395 ttaagagagaaaaaatatgatgctttaatagaacca 39494360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 39426347 - 39426282
Alignment:
Q  346 tttaattatgttcatgttgtaggtcttagccaagttgaaaatcttcacttgttttcaatatcagaca 412  Q
    |||||| ||||| || ||||| ||||||| ||| ||||||||||||||| ||||| |||||||||||    
T  39426347 tttaatcatgttaatcttgtatgtcttagtcaacttgaaaatcttcactagtttt-aatatcagaca 39426282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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