View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_high_19 (Length: 395)
Name: NF5294_high_19
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 28451504 - 28451282
Alignment:
| Q |
24 |
gcagatggaatatgtcttctcttcgctcttccttaccttcaattcctcctagttccgcttcttcattgcgcttcactcgttcttctccaactacactccg |
123 |
Q |
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| T |
28451504 |
gcagatggaatatgtcttctcttcgctcttccttaccttcaattcctcctacttccgcttcttcattgcgcttcactcgttcttctccaacaacactccg |
28451405 |
T |
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| Q |
124 |
aatttctagacccaaatcccaatcactatttccctctttcactggacttcgtcctctcccaatcttcgctcctccatcaggtataccttcatttca---- |
219 |
Q |
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| T |
28451404 |
aatttctagagtcaaatcccaatccctacttccctctttcactggacttcgtcctctcccaatcttcgctcctccatcaggtataccttcatttcatttc |
28451305 |
T |
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| Q |
220 |
-tttccgttgcattcattgtgtt |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
28451304 |
atttccgttgcattcattgtgtt |
28451282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 28451239 - 28451194
Alignment:
| Q |
258 |
tattgtttacattttttgtttaattactctgtatcactgtttgaag |
303 |
Q |
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| T |
28451239 |
tattgtttacattttttgtttaattactctgtatcactgtttgaag |
28451194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 374
Target Start/End: Complemental strand, 28451153 - 28451119
Alignment:
| Q |
340 |
tgtgttttatagatgacaattacatttataggctt |
374 |
Q |
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| T |
28451153 |
tgtgttttatagatgacaattacatttataggctt |
28451119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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