View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_high_21 (Length: 378)
Name: NF5294_high_21
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 369
Target Start/End: Original strand, 5875244 - 5875605
Alignment:
| Q |
9 |
gataacactatgaggagatgaagtaatagtcattcgtttctcaattacatccaaacaaaccacgtcccatacttctttgctgaactgacatccaaacaga |
108 |
Q |
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| T |
5875244 |
gataacactatgaggagatgaagtaatagtcattcgtttctcaattacatccaaacaaaccacgtcccatacttctttgttgaactgacatccaaacaga |
5875343 |
T |
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| Q |
109 |
agatggattgtttgttcgacactattgtcacaaacagggcagctaccaggacagttagcacccctctcttgcaacttctttcgcgtagacaaacaatctc |
208 |
Q |
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| T |
5875344 |
agatcgattgtttgttcgacactattgtcacaaacagggcagctactaggacagttagcacccctctcttgcaacttctttcgcatatacaaacaatctc |
5875443 |
T |
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| Q |
209 |
gacaaactcttcaaataacattccgcgatttaatcctcgaaatccgagtaggcgatacatgaccgatttaaaaagccattttcatttgatttaaaaagtg |
308 |
Q |
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| T |
5875444 |
gacaaactcttcaaataagattccgcgatttaatcctccaaatccgagtagacgatacatgaccgatttaaaaagccattttcatatgatttaaaaagtg |
5875543 |
T |
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| Q |
309 |
-nnnnnnnnatacttgtgttgagtggggacattacaacaagcgagattcatttaagtataat |
369 |
Q |
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| T |
5875544 |
tttttttttatacttgtgttgagtggggacattacaacaagcgaggttcatttaagtataat |
5875605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 18111233 - 18111195
Alignment:
| Q |
270 |
accgatttaaaaagccattttcatttgatttaaaaagtg |
308 |
Q |
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| T |
18111233 |
accgatttaaaaagtcattttcatctgatttaaaaagtg |
18111195 |
T |
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