View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5294_high_22 (Length: 361)
Name: NF5294_high_22
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 13995433 - 13995088
Alignment:
| Q |
8 |
atatatgaggttgttgggtgacttggtatccggatgagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggttt |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
13995433 |
atatatgaggttgttgtgtgacttggtatccgaaggagagtctggccgttgtcttgaatgttgatgacatcaattttggaaatcccaaaacatctggttt |
13995334 |
T |
|
| Q |
108 |
tggtggcgttcttcataggaatgatggcagttggctatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13995333 |
tggtggcgttcttcataggaatgatggcagttggctatatgagtt----ggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtat |
13995238 |
T |
|
| Q |
208 |
catggcatgaaagcagctttagaaagatgatatagagatgtgatttgctactcttactcgactctggttgttcagttgtttcactaacaatgaatcctta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
13995237 |
catggcatgaaagcagctttagaaagatgatatagagatgtgatttgctactcttactcgactctggctgttcagttgtttcactaacagtgaatcctta |
13995138 |
T |
|
| Q |
308 |
catcattatgcggcaattatcagtaatttgcaaagaagttgtagcgttca |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13995137 |
catcattatgcggcaattatcagtaatttgcaaagaagctgtagcgttca |
13995088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 22911492 - 22911224
Alignment:
| Q |
16 |
ggttgttgggtgacttggtatccggatgagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggttttggtggcg |
115 |
Q |
| |
|
||||||| ||||||||| |||| || |||||| ||||| |||||||| |||||| || || || ||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
22911492 |
ggttgttatgtgacttggcatccagaggagagtatggcctttgtcttgaatgttgttggcagcagttttggaaatcccgaaatatctggtttttgtggcg |
22911393 |
T |
|
| Q |
116 |
ttcttcataggaatgatggcagttggctatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtatcatggcat |
215 |
Q |
| |
|
|||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||| |||| | |
|
|
| T |
22911392 |
ttctccgcaggaatgatggtagttggctatatgggtttgctggaaatgttggtatttccttagtcatacatgtagagttgttagctctgtattatggatt |
22911293 |
T |
|
| Q |
216 |
gaaagcagctttagaaagatgatatagagatgtgatttgctactcttactcgactctggttgttcagtt |
284 |
Q |
| |
|
|||||| ||| |||||| ||| || |||||||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
22911292 |
aaaagcaacttgggaaagaggatttaaggatgtgatttgctactctgactcaactatggttgttcagtt |
22911224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 25 - 339
Target Start/End: Original strand, 37706840 - 37707155
Alignment:
| Q |
25 |
gtgacttggtatccggatgagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggttttggtggcgttcttcata |
124 |
Q |
| |
|
||||||||| |||| ||||||||| ||| | || || || ||||||||| || | |||||||||||| ||| | |||||||||| | ||||||| || |
|
|
| T |
37706840 |
gtgacttggcatccagatgagagtgtggtcgttatcctgaatgttgatggcaatagttttggaaatcctggaatatttggttttggtagtgttcttcgta |
37706939 |
T |
|
| Q |
125 |
ggaatgatggcagttggctatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtatcatggcatgaaagcagc |
224 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||| ||||||||||| |||||||| | |
|
|
| T |
37706940 |
ggaatgatggcagttggctatatgggtttgctggaaatgttggtatttccacaatcttacatgtagagttgttagctttgtatcatggc-tgaaagcatc |
37707038 |
T |
|
| Q |
225 |
tttagaaagatgatatagagatgtgatttgctactcttactcgactctggttgttcagtt-gtttcactaacaatgaatcctt-acatcattatgcggca |
322 |
Q |
| |
|
|| |||||| | ||||| |||||||||||||||||| |||| ||||||||||||||||| |||||| | ||||||||| |||||||||||| || |
|
|
| T |
37707039 |
ttgggaaagagggtatagggatgtgatttgctactctgactcaactctggttgttcagttagtttcaaccatggtgaatccttggcatcattatgcgaca |
37707138 |
T |
|
| Q |
323 |
attatcagtaatttgca |
339 |
Q |
| |
|
|| ||||||||| |||| |
|
|
| T |
37707139 |
atcatcagtaatgtgca |
37707155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 15402765 - 15402499
Alignment:
| Q |
7 |
tatatatgaggttgttgggtgacttggtatccggatgagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggtt |
106 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||| || ||||| || |||||||| ||||||||| || |||||| | ||||||| ||| ||| ||| |
|
|
| T |
15402765 |
tatataagaggtcgttatgtgacttggtatcctgagaagagtacggttgttgtcttgaatgttgatggcaacaatttcgaaaatcccggaatatctagtt |
15402666 |
T |
|
| Q |
107 |
ttggtggcgttcttcataggaatgatggcagttggctatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgta |
206 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||| | |||||| ||||||||||||||||||||||| ||||||||| ||| | ||||||||||||| ||| |
|
|
| T |
15402665 |
ttggtggcatttttcgtaggaatgatggcagttagatatatgggtttgctggaaatgttggtattttcacaatcatacatatagagttgttagctccgta |
15402566 |
T |
|
| Q |
207 |
tcatggcatg-aaagcagctttagaaagatgatatagagatgtgatttgctactcttactcgactct |
272 |
Q |
| |
|
|||| || || |||||||||| ||||||||||||| ||||||||||| |||||| |||| ||||| |
|
|
| T |
15402565 |
tcattgcttgaaaagcagcttgggaaagatgatatatggatgtgatttgatactctaactcaactct |
15402499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 53244653 - 53244395
Alignment:
| Q |
25 |
gtgacttggtatccggatgagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggttttggtggcgttcttcata |
124 |
Q |
| |
|
||||||||| ||| ||| |||||| |||||||||||||| |||||||||||| |||||||||||||||| ||| ||| ||||||||||||||| | || |
|
|
| T |
53244653 |
gtgacttggcatctggaggagagtatggccattgtcttgaatgttgatgacaacaattttggaaatcccgaaatatcttattttggtggcgttctccgta |
53244554 |
T |
|
| Q |
125 |
ggaatgatggcagttggctatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtatcatggcatgaaagcagc |
224 |
Q |
| |
|
||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| | | |||| | |
|
|
| T |
53244553 |
ggaatgacgacaattggctatatgggtttgctggaaatgttggtatttccacaatcatacatgtagagttgttaactctgtatcatgacttcaaagttgt |
53244454 |
T |
|
| Q |
225 |
tttagaaagatgatatagagatgtgatttgctactcttactcgactctggttgttcagt |
283 |
Q |
| |
|
|| |||||| |||||| |||||||||| |||||| ||||||||| || |||||||| |
|
|
| T |
53244453 |
ttgggaaagaggatatatgaatgtgatttgttactctgactcgactcgggctgttcagt |
53244395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 30407039 - 30406705
Alignment:
| Q |
8 |
atatatgaggttgttgggtgacttggtatccggatgagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggttt |
107 |
Q |
| |
|
||||| ||||| ||| ||||||||| |||| || |||||| ||||| |||||||| ||||||||| || | |||||||||| ||| |||||||| |
|
|
| T |
30407039 |
atataggaggtcgttatgtgacttggcatccagaggagagtatggccgttgtcttgaatgttgatggcaacggttttggaaattttggaatatctggttt |
30406940 |
T |
|
| Q |
108 |
tggtggcgttcttcataggaatgatggcagttggctatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtat |
207 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||| |
|
|
| T |
30406939 |
tggtggcgttgtttgcaggaatgatggtagttggctatattggtttgctggaaatgctggtatttccacaatcatacatgtagagttgtcagctctgtat |
30406840 |
T |
|
| Q |
208 |
catggcatgaaagcagctttagaaagatgatatagagatgtgatttgctactcttactcgactctggttgttcagtt-gtttcactaacaatgaat-cct |
305 |
Q |
| |
|
|||| |||||||||||| || ||| ||||| |||||||||||||||| | |||| |||||| | ||||||| |||||| | |||||| ||| |
|
|
| T |
30406839 |
tatggattgaaagcagcttgggatagagaatatatggatgtgatttgctactttgactcaactctgcctattcagttagtttcaaccatgatgaatccct |
30406740 |
T |
|
| Q |
306 |
tacatcattatgcggcaattatcagtaatttgcaa |
340 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |
|
|
| T |
30406739 |
cgcatcattatgcggcaattattagtaatgtgcaa |
30406705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 7408468 - 7408580
Alignment:
| Q |
129 |
tgatggcagttggctatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtatcatggcatgaaagcagcttta |
228 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |||||||||||||| || | ||| | || |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7408468 |
tgatggcagttggctttatgggtttgctggtaatgttggtatttcaaccaacataaacgtcgagttgttagctctgtatcatggcttgaaagcagcttgg |
7408567 |
T |
|
| Q |
229 |
gaaagatgatata |
241 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
7408568 |
gaaagaggatata |
7408580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 34596566 - 34596847
Alignment:
| Q |
8 |
atatatgaggttgttgggtgacttggtatccggatgagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggttt |
107 |
Q |
| |
|
||||| ||||| ||| ||||||||| |||| || |||||| ||||| |||||||| ||||||||| | || |||||||||||| ||| ||| |||| |
|
|
| T |
34596566 |
atataggaggtcgttatgtgacttggcatccagaggagagtatggccgttgtcttgaatgttgatggtagcagctttggaaatcccgaaatatctagttt |
34596665 |
T |
|
| Q |
108 |
tggtggcgttcttcataggaatgatggcagttggctatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtat |
207 |
Q |
| |
|
| |||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||| |
|
|
| T |
34596666 |
ttgtggcgttcttcgcaggaatgatggtagttggctacatgggtttgctggaaatgttggtatttccagagtcatacatgtagagttgttagctctgtat |
34596765 |
T |
|
| Q |
208 |
catggcatgaaagcagctttagaaagatgatataga-----gatgtgatttgctactcttactcgactctggttgttcagtt |
284 |
Q |
| |
|
|||| |||||||||||| ||||||| |||||| | |||||||||| ||||||| |||| ||||||| ||||||||| |
|
|
| T |
34596766 |
tatggattgaaagcagcttgagaaagaggatataaagatatgatgtgattttctactctgactcaactctggctgttcagtt |
34596847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 241
Target Start/End: Original strand, 10626587 - 10626785
Alignment:
| Q |
43 |
gagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggttttggtggcgttcttcataggaatgatggcagttggc |
142 |
Q |
| |
|
|||||| ||| | |||| ||| ||||||| |||| ||||||||||||||| ||| | ||||||| ||||||||| ||| |||||||| ||||| | |
|
|
| T |
10626587 |
gagagtatggtcgttgtgttgaatgttgacgacaacaattttggaaatcctggaataaccaattttggttgcgttcttcgtagtaatgatggtagttgac |
10626686 |
T |
|
| Q |
143 |
tatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtatcatggcatgaaagcagctttagaaagatgatata |
241 |
Q |
| |
|
|| ||| || || || ||| |||||||||||||||||| | ||| | |||||||||||||||| ||||||| |||||||||| ||||||| |||||| |
|
|
| T |
10626687 |
tacatgtgtatgatgtaaaggttggtatttccacaatcgtacatatagagttgttagctctgtttcatggccctaaagcagcttgagaaagaggatata |
10626785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 339
Target Start/End: Original strand, 41221257 - 41221381
Alignment:
| Q |
216 |
gaaagcagctttagaaagatgatatagagatgtgatttgctactcttactcgactctggttgttcagtt-gtttcactaacaatgaatcctt-acatcat |
313 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| | | |||||| || |||||| |
|
|
| T |
41221257 |
gaaagcagcttg-gaaagaggatatagggatgtgatttgctactcttactcgactttggttgttcagttagtttcaatcatgatgaatttttggcatcat |
41221355 |
T |
|
| Q |
314 |
tatgcggcaattatcagtaatttgca |
339 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
41221356 |
tatgcggcaattatcagtaatgtgca |
41221381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 10951491 - 10951375
Alignment:
| Q |
15 |
aggttgttgggtgacttggtatccggatgagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggttttggtggc |
114 |
Q |
| |
|
|||||||| ||||||||| ||| || |||||| ||| | |||||||| ||||||||| || |||||||| |||||| ||| ||||||||||| ||| |
|
|
| T |
10951491 |
aggttgttatgtgacttggcatctagaggagagtatggtcgttgtcttgaatgttgatggcaacaattttgaaaatcctggaatatctggttttggcggc |
10951392 |
T |
|
| Q |
115 |
gttcttcataggaatga |
131 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
10951391 |
attcttcgtaggaatga |
10951375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 43 - 276
Target Start/End: Complemental strand, 32467617 - 32467385
Alignment:
| Q |
43 |
gagagtctggccattgtcttgcatgttgatgacatcaattttggaaatcccacaatttctggttttggtggcgttcttcataggaatgatggcagttggc |
142 |
Q |
| |
|
|||||| || || |||||||| ||||||||| || || ||||| |||||||| ||| |||||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
32467617 |
gagagtatgaccgttgtcttgaatgttgatggcagcagttttgaaaatcccaaaatatctggtttcggtggcgttcttcgcaggaatgatggtagttggc |
32467518 |
T |
|
| Q |
143 |
tatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtatcatggcatgaaagcagctttagaaagatgatatag |
242 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| | || ||||| |||||||||||||| ||| |||| |||||| ||| || |||||| |||||| |
|
|
| T |
32467517 |
tatatgggtttgctgaaaatgttggtatttccacatttatacatgtagagttgttagctctatattatggattgaaagtagc-ttggaaagaggatataa |
32467419 |
T |
|
| Q |
243 |
agatgtgatttgctactcttactcgactctggtt |
276 |
Q |
| |
|
||| |||||||||||||| |||| ||||||||| |
|
|
| T |
32467418 |
ggatttgatttgctactctaactcaactctggtt |
32467385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 1823613 - 1823531
Alignment:
| Q |
129 |
tgatggcagttggctatatgagtttgctggaaatgttggtatttccacaatcatgcatgttgagttgttagctctgtatcatgg |
212 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||||||| |||||||||||| ||||| |||||||||| | |||||||||| |
|
|
| T |
1823613 |
tgatggcagttggctatatgagttggccgaaaatgttggta-ttccacaatcatccatgtagagttgttagttttgtatcatgg |
1823531 |
T |
|
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 3514106 - 3514168
Alignment:
| Q |
103 |
ggttttggtggcgttcttcataggaatgatggcagttggctatatgagtttgctggaaatgtt |
165 |
Q |
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| T |
3514106 |
ggttttggtggcgttcttcgtaataatgatggcaattggctatatgagtttgctgaaaatgtt |
3514168 |
T |
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