View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_high_24 (Length: 342)
Name: NF5294_high_24
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 1592892 - 1592709
Alignment:
| Q |
20 |
gatcttagagcctatatttatcaaacaaacatacaaaatagcaattaaatatcaataaaaa--cacaacattttcaaaatttatagaagaaagttaaatg |
117 |
Q |
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| T |
1592892 |
gatcttagagcctatatttatcaaaaaaacatacaaaatagcaatcaaatatcaataaaaactcacaacatcttcagaatttacagaagaaagtctaatg |
1592793 |
T |
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| Q |
118 |
aaaggcaataactaaacgtgtagtcctgatt-----aat--ccaatcataatgaaaattttgccgtcgggctgcgcgaaaggaa |
194 |
Q |
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| T |
1592792 |
aaaggtgataactaaccgtgtagtcctgagtataccaatcaccaatcataatgaaaatttcaccgtcgggctgcgcgaaaggaa |
1592709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 6097905 - 6097967
Alignment:
| Q |
20 |
gatcttagagcctatatttatcaaacaaacatacaaaatagcaattaaatatcaataaaaaca |
82 |
Q |
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| T |
6097905 |
gatcttagagcctatatttatcaaacaaacatacaaaatagcaattaaatatcaataaaaaca |
6097967 |
T |
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