View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_high_27 (Length: 330)
Name: NF5294_high_27
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 7903058 - 7903374
Alignment:
| Q |
1 |
ctgttgagctagttttgcaggatactaatctcctcacagttgaatcacatccatttcatcttcatggatataactttttcgttgtcggaactggtatcgg |
100 |
Q |
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| T |
7903058 |
ctgttgagctagttttgcaggatactaatctcctcacagttgaatcacatccatttcatcttcatggatataactttttcgttgtcggaactggtatcgg |
7903157 |
T |
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| Q |
101 |
taattttgatcctgctaaagaccctgccaaatacaacttggtagatcctattgaaaggaacacaattggggttcctacaggtggttggaccgcaattcgc |
200 |
Q |
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| T |
7903158 |
taattttgatcctgctaaagaccctgccaaatacaacttggtagatcctattgaaaggaacacaattggggttcctacaggtggttggaccgcaattcgc |
7903257 |
T |
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| Q |
201 |
ttccaagcagataatccaggtatgtctgaagttgtcctaagcttctataatatttaactttatggcatattctgctatgccacaacatgatgtttttgta |
300 |
Q |
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| T |
7903258 |
ttccaagcagataatccaggtatgtctgaagttgtcctaagcttctataatatttaactttatggcatattctgctatgtcacgacatgatgtttttata |
7903357 |
T |
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| Q |
301 |
tatacaattgcacaggt |
317 |
Q |
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| T |
7903358 |
tatacaattgcacaggt |
7903374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 7892790 - 7892986
Alignment:
| Q |
3 |
gttgagctagttttgcaggatactaatctcctcacagttgaatcacatccatttcatcttcatggatataactttttcgttgtcggaactggtatcggta |
102 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || || | |
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| T |
7892790 |
gttgagctggttttgcaagatactaatcttctcacagttgaatcacatccatttcatcttcatggttataacttttttgttgttggaactggaattggca |
7892889 |
T |
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| Q |
103 |
attttgatcctgctaaagaccctgccaaatacaacttggtagatcctattgaaaggaacacaattggggttcctacaggtggttggaccgcaattcg |
199 |
Q |
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| T |
7892890 |
attttgatccagctaaagaccctgctaaatataatttggttgatcctatggagaggaacaccgttggcgttccaactggtggttggaccgcaattcg |
7892986 |
T |
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