View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_high_28 (Length: 325)

Name: NF5294_high_28
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_high_28
NF5294_high_28
[»] chr4 (1 HSPs)
chr4 (19-313)||(53331403-53331697)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 53331697 - 53331403
Alignment:
Q  19 aaaaccactagttcatgaaatgtaaaatggccaaccaagcatggttcacttcccccttggccctccacgtgcctcaacatctgagtttgaagacttgagt 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53331697 aaaaccactagtttatgaaatgtaaaatggccaaccaagcatggttcacttcccccttggccctccatgtgcctcaacatctgagtttgaagacttgagt 53331598  T
Q  119 gcaagaatggctttataaaatggatcaatttgcctcccaatattttagaataacattatgataaactggtaatagagcagtgcaacaaggcgacatttaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53331597 gcaagaatggctttataaaatggatcaatttgcctcccaatattttagaataacattatgataaactggtaatagagcagtgcaacaaggcgacatttaa 53331498  T
Q  219 aggctatatatttaagtagagataacaaacaataattgatctcccaagttaacttaatcaaaatatatggatgctaacaagttaacttccccctt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53331497 aggctatatatttaagtagagataacaaacaataattgatctcccaagttaacttaatcaaaatatatggatgctaacaagttaacttccccctt 53331403  T

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