View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_high_32 (Length: 309)

Name: NF5294_high_32
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_high_32
NF5294_high_32
[»] chr8 (1 HSPs)
chr8 (1-293)||(16615503-16615792)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 16615792 - 16615503
Alignment:
Q  1 aatttgttccgtttgttcattctaccccggaagttgtatatgtgtagaagaagtgtttgaaaatgaaggatggttcagactagttagtttgatgagaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16615792 aatttgttccgtttgttcattctaccccggaagttgtatatgtgtagaagaagtgtttgaaaatgaaggatggttcagactagttagtttgatgagaact 16615693  T
Q  101 taaaacttgttgttttaaatcagtgttcattgttttaaaacttgttgatgtataaaaagtattcatgcctattcattttgctactgcatatctgttttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16615692 taaaacttgttgttttaaatcagtgttcattgttttaaaacttgttgatgtataaaaagtattcatgcctattcattttgctactgcatatctgttttgc 16615593  T
Q  201 tgggtttctggttagcgcgttttttctggatgttgtgttagtgctgcctgttttggattttaatcataccgtaaaaatttccaaggatgtata 293  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16615592 tgggtttctggttagcgcgttttttctggatgttgtgt---tgctgcctgttttggattttaatcataccgtaaaaatttccaaggatgtata 16615503  T

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