View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_high_35 (Length: 291)
Name: NF5294_high_35
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 2906363 - 2906557
Alignment:
| Q |
1 |
gaaaacaattttggatttatggtgttgttgtttggatttgaggaacatggtgagatgagaatgtgatgttaacaaagaatgggcgagttatgtacaatga |
100 |
Q |
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| T |
2906363 |
gaaaacaattttggatttatggtgttgttgtttggatttgaggaacatggtgaaatgagaatgtgatgttaacaaagaatgggcgagttatgtacaatga |
2906462 |
T |
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| Q |
101 |
attggttggactcaggtggtttttccaagccttcgatgaatttgtgttttggtaagaataaccgacaagggagaaaagtgaaacgagagaaggta |
195 |
Q |
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| T |
2906463 |
attggttggactcaggtggtttttccaagccttcgatgaatttgtgttttggtaagaataaccaacaagggagaaaagtgaaacgagagaaggta |
2906557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 2907462 - 2907551
Alignment:
| Q |
197 |
aaacttaactccatttttaaaatgttagcaatatctatcatagccatgctttattaatcttttttaaaataaatgttaccctttgctact |
286 |
Q |
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| T |
2907462 |
aaacttaactccatttttaaaatgttagcaatatctatcatagccatgctttattaatcttttttaaaataaatgttaccttttgctact |
2907551 |
T |
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