View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_high_6 (Length: 582)
Name: NF5294_high_6
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 30948898 - 30948349
Alignment:
| Q |
1 |
gggaggaagcctaaatttgcagccgctttaacaacaaaaaatccaataacaggtagtaagaaaagtttaacaatgatgatactaatgaggaccaatggtt |
100 |
Q |
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| T |
30948898 |
gggaggaagcctaaatttgcagcagctttaacaacaaaaaatccaataacaggtagtaagaaaagtttaacaatgatgatactaatgaggaccaatggtt |
30948799 |
T |
|
| Q |
101 |
tgatacttgatgatcgcattcctgcaatttcaggacattnnnnnnntaacattagttattcagactgtttttaaagaatgttgagaagaatgagttaagt |
200 |
Q |
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| T |
30948798 |
tgatacttgatgatcgcattcctgcaatttcaggacattaaaataataacattagttattcagactgtttttaaagaatgttgagaagaatgagttaagt |
30948699 |
T |
|
| Q |
201 |
ctttcaaagttaaatttcatataccttgtgtaagg-ttgccacctagcaaaagggtgatgcaaggaattgtcccatccctacaaagaatgagttcagtct |
299 |
Q |
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| T |
30948698 |
ctttcaaagttaaatttcatataccttgtgtaagggttgccacctagcaaaagggtgatgcaaggaattgtcccatccctacaaagaatgagttcagtct |
30948599 |
T |
|
| Q |
300 |
agcttaaaagtttgattatctctataagactgaaacttcagattgaagacgaccatgtcggtatcagacacatgtcggtatcagacactggcatgaaacc |
399 |
Q |
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| T |
30948598 |
agcttaaaagtttgattatctctataagactgaaacttcagattgaagacgaccatgtcggtatcag-----------------acactggcatgaaacc |
30948516 |
T |
|
| Q |
400 |
aacacacatgattctaggtgaaaagaaatggatacagatgaaaaggaacataccctagcaactgaatggagtcttgaatcacttttagtggagcatcttg |
499 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30948515 |
aacacacatgactctaggtgaaaagaaatggatacagatgaaaaggaacataccctagcaactgaatggagtcttgaatcacttttagtggagcatcttg |
30948416 |
T |
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| Q |
500 |
tccaattattaggttccttagagttttaactccaccaaagaggaaacctaaatactgatcatgaaat |
566 |
Q |
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| T |
30948415 |
tccaattattaggttccttagagttttgactccaccaaagaggaaacctaaatactgatcattaaat |
30948349 |
T |
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