View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_high_9 (Length: 526)
Name: NF5294_high_9
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 30943456 - 30942946
Alignment:
| Q |
1 |
tagtgttttggttgttatggaagttaaggtaaaaaggggaagaaaatggataagaggttttgaagcagttcagttcctgattcatgagttgagttatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30943456 |
tagtgttttggttgttatggaagttaaggtaaaaaggggaagaaaatggataagaggttttgaagcagttcagttcctgattgatgagttgagttatgtt |
30943357 |
T |
|
| Q |
101 |
ctcaacaaaatgattctttctttcattcttatttctttgtttatttgttagctgtaaaatttaaactctcatactaggttggaacttggatcccaggagc |
200 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| ||||||||| |||||||| |
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| T |
30943356 |
ctcaacaaaatgattctctccttcattcttatttctttgtttatttcttagctataaaatttaaactctcttactaggttgtaacttggattccaggagc |
30943257 |
T |
|
| Q |
201 |
aataataggaacactagctatactatacacgtctaaaaccaacattacgtttgagcggaactgaactcggatttcttaagcaaggtctctggtttgagtc |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30943256 |
aataataggaacacta-----cctatacacgtctaaaaccaacattacgttcgagtggaactgaactcggatttcttaagcaaggtctctggtttgagtc |
30943162 |
T |
|
| Q |
301 |
ttctcgatnnnnnnngtggttgagaggagagatcctgctaaaggtgttcggcgaggtctgactaaatatttctcatagacaattttggaatttccttttt |
400 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
30943161 |
ttctcgataaaaaaagtggtt-agaggagagatcctgctaaaggtgttcggcaaggtctgaccaaatatttctcatagacaattttggaattcccttttt |
30943063 |
T |
|
| Q |
401 |
gaaaagcacacaccaaaatgatgtgcatgtttctctagtgtaatttgtctatc---tattttcnnnnnnnnngtccatgcatctatttagaaaacatgtt |
497 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
30943062 |
gaaaagcacacaccaaaatgatgtgtatgtttctctagtgtaatttgtctatcaatttttttttttttttttgtccatgcatctatttagaaaacatgtt |
30942963 |
T |
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| Q |
498 |
tgatggtctctgctcct |
514 |
Q |
| |
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|||||||||||| |||| |
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| T |
30942962 |
tgatggtctctgatcct |
30942946 |
T |
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