View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_11 (Length: 506)
Name: NF5294_low_11
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 34 - 491
Target Start/End: Complemental strand, 52913490 - 52913029
Alignment:
| Q |
34 |
tactaagaaatgtttttctatccaaatcaaaataa----ggtgactagtaattcttttaaagctcaccgttaatctaaacatgtacttaccatcttctgg |
129 |
Q |
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| T |
52913490 |
tactaagaaatgtttttctatccaaatcaaaataattaaggtgactagtaattcttttaaagctcaccgttaatctaaacatgcacttaccatcttctgg |
52913391 |
T |
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| Q |
130 |
ctgagaggctggcgttgaattcttgccaatcacaatttggacatggattgaaggttctaacgctacggtctccatcgttgaaaccaccggtttggataag |
229 |
Q |
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| T |
52913390 |
ctgagaggctggcgttgaattcttgccaatcacaatttggacatggattgaaggttctaacgctacggtctccatcgttgaaaccaccggtttggataag |
52913291 |
T |
|
| Q |
230 |
agttccgttgggattgacggaaccggaggaacaccagatgttggtttggatgaagagtggtcggaatgtattagaaaagacgtcatattcaagggagtga |
329 |
Q |
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| T |
52913290 |
agttccgttgggattgacggaaccggaggaacaccagatgttggtttggatgaagagtggtcggaatgtattagaaaagacgtcatattcaagggagtga |
52913191 |
T |
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| Q |
330 |
gcagtgcaatcatttttaacagcttgctcttgtgggttaacacggcatctaccgttgggtaaagataagtttgagaagccaaaatctgtacggtcaaaaa |
429 |
Q |
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| T |
52913190 |
gcagtgcaatcatttttcacagcttgctcttgtgggttaacacggcatctaccgttgggtaaagataagtttgagaagccaaaatctgtacggtcaaaaa |
52913091 |
T |
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| Q |
430 |
tgatgacacggtcgttgtgtagtaattgcatatgcatggctacaatgccaatgttgttttgt |
491 |
Q |
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| T |
52913090 |
tgatgacacggtcgttgtgtagtaattgcatatgcatggctacaatgccaatgttgttttgt |
52913029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 16846220 - 16846156
Alignment:
| Q |
201 |
ccatcgttgaaaccaccggtttggataagagttccgttgggattgacggaaccggaggaacacca |
265 |
Q |
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| T |
16846220 |
ccatcgttgaagccaccggtttggattagggttccggtgggggagactgcaccggaggaacacca |
16846156 |
T |
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