View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_low_12 (Length: 492)

Name: NF5294_low_12
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_low_12
NF5294_low_12
[»] chr3 (4 HSPs)
chr3 (13-273)||(13994800-13995064)
chr3 (339-478)||(13994595-13994734)
chr3 (15-131)||(22910995-22911111)
chr3 (14-134)||(53507728-53507848)
[»] chr4 (2 HSPs)
chr4 (15-141)||(7408736-7408862)
chr4 (15-123)||(30406542-30406650)
[»] chr2 (1 HSPs)
chr2 (28-91)||(34596973-34597036)
[»] chr1 (1 HSPs)
chr1 (14-195)||(37707210-37707391)
[»] chr7 (3 HSPs)
chr7 (14-134)||(32467181-32467301)
chr7 (28-91)||(25017522-25017585)
chr7 (71-141)||(3326360-3326430)
[»] chr8 (1 HSPs)
chr8 (58-91)||(3514325-3514358)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 13995064 - 13994800
Alignment:
Q  13 tgaattcgtccgcttatttcatggctaaattagaagctgcaagttctgatatttggcatgagtttttggagccaccagaaggcttacttacgctggtgta 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  13995064 tgaattcgtccgcttatttcatggctaaattaggagctgcaagttctgatatttggcgtgagtttttggagccaccagaaggcttacttccgctggtgta 13994965  T
Q  113 ggatgatgcccgacgagagatgtatcacaaaaattcgt-ttttacttgttaactatttcttttctttttgttagcttcttttccc---nnnnnnnnntta 208  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||            |||    
T  13994964 ggatgatgcctgacaagagatgtatcacaaaaattcgttttttacttgtttactatttcttttctttttgttagcttcttttcccaaaaaaataaaatta 13994865  T
Q  209 catttgcaatcgcaattcaaaactatgtctatttcttttctgcatgtttagtgagtatgagtcaa 273  Q
    ||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  13994864 catctgcaatcacaattcaaaactatgtctatttcttttccgcacgtttagtgagtatgagtcaa 13994800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 339 - 478
Target Start/End: Complemental strand, 13994734 - 13994595
Alignment:
Q  339 tatatatacacacgtgcttaatgaaacagacaaagcaaccccagttgcagaaacttgtctatgtatatgttaggaataaacagagcgtagagtctcattc 438  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13994734 tatatatatacacgtgcctaatgaaacagacaaagcaaccccagttgcagaaacttgtctatgtatatgttaggaataaagagagcgtagagtctcattc 13994635  T
Q  439 ttagagctttcaattaagagaaaactagttagctatacat 478  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  13994634 ttagagcttacaattaagagaaaactagttagctatacat 13994595  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 22911111 - 22910995
Alignment:
Q  15 aattcgtccgcttatttcatggctaaattagaagctgcaagttctgatatttggcatgagtttttggagccaccagaaggcttacttacgctggtgtagg 114  Q
    |||||||||||  ||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||| | ||| || || ||| ||||| || |||    
T  22911111 aattcgtccgcggatttcattgctaaactaggagctacaagttctgatatttggcatgagtttttggagcctctagagggtttgcttccgctgctgcagg 22911012  T
Q  115 atgatgcccgacgagag 131  Q
     ||||||||||| ||||    
T  22911011 ttgatgcccgacaagag 22910995  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 53507848 - 53507728
Alignment:
Q  14 gaattcgtccgcttatttcatggctaaattagaagctgcaagttctgatatttggcatgagtttttggagccaccagaaggcttacttacgctggtgtag 113  Q
    ||||||||||||  ||||||| |||||| ||| ||||||||| ||||||||||||| |||||||||||||||||| ||||| || ||| || || || |     
T  53507848 gaattcgtccgcggatttcattgctaaactaggagctgcaagctctgatatttggcgtgagtttttggagccaccggaaggtttgcttccgttgttgcat 53507749  T
Q  114 gatgatgcccgacgagagatg 134  Q
    | |||||||||| ||||||||    
T  53507748 gctgatgcccgatgagagatg 53507728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 7408736 - 7408862
Alignment:
Q  15 aattcgtccgcttatttcatggctaaattagaagctgcaagttctgatatttggcatgagtttttggagccaccagaaggcttacttacgctggtgtagg 114  Q
    ||||||||||   |||||||||||||||||| |||| |||||||||| ||||||  |||||||||||||||| | || || |||||| ||||| || | |    
T  7408736 aattcgtccgtggatttcatggctaaattaggagctccaagttctgagatttggtgtgagtttttggagccatcggagggtttacttccgctgctgcaag 7408835  T
Q  115 atgatgcccgacgagagatgtatcaca 141  Q
     ||||||||||| ||||||||||||||    
T  7408836 ctgatgcccgacaagagatgtatcaca 7408862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 30406650 - 30406542
Alignment:
Q  15 aattcgtccgcttatttcatggctaaattagaagctgcaagttctgatatttggcatgagtttttggagccaccagaaggcttacttacgctggtgtagg 114  Q
    ||||| |||||  ||||||| |||||| ||| ||||||||||||||||||||||| |||||||||||||||| | || || || ||| ||||| || |||    
T  30406650 aattcatccgcggatttcattgctaaactaggagctgcaagttctgatatttggcgtgagtttttggagccatcggagggtttgcttccgctgctgcagg 30406551  T
Q  115 atgatgccc 123  Q
     ||||||||    
T  30406550 ctgatgccc 30406542  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 34596973 - 34597036
Alignment:
Q  28 atttcatggctaaattagaagctgcaagttctgatatttggcatgagtttttggagccaccaga 91  Q
    ||||||| |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  34596973 atttcattgctaaactaggagctgcaagttctgatatttggcgtgagtttttggagccaccaga 34597036  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 37707210 - 37707391
Alignment:
Q  14 gaattcgtccgcttatttcatggctaaattagaagctgcaagttctgatatttggcatgagtttttggagccaccagaaggcttacttacgctggtgtag 113  Q
    ||||| ||| ||| |||||||||||||| ||| |||||||||| || | ||||| | ||||||| |||||| || ||| ||||| ||| | | | |  ||    
T  37707210 gaattggtctgctgatttcatggctaaactaggagctgcaagtacttagatttgacgtgagtttctggagctactagagggcttgctttctcagctacag 37707309  T
Q  114 gatgatgcccgacgagagatgtatcacaaaaattcgtttttacttgttaactatttcttttctttttgttagcttcttttcc 195  Q
    | ||||||||| |||||||||||||||| | ||| |||||||  ||||   | || ||||||||||||||||| ||||||||    
T  37707310 gctgatgcccgtcgagagatgtatcacagagattagtttttagctgtttttttttccttttctttttgttagcctcttttcc 37707391  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 32467301 - 32467181
Alignment:
Q  14 gaattcgtccgcttatttcatggctaaattagaagctgcaagttctgatatttggcatgagtttttggagccaccagaaggcttacttacgctggtgtag 113  Q
    ||||||||||||  ||||||| |||||||||| |||| |||||| ||||||||||  |||||||||||||||||| ||  | || ||| ||||| || ||    
T  32467301 gaattcgtccgcggatttcattgctaaattaggagctacaagttatgatatttggagtgagtttttggagccaccggagagtttgcttccgctgctgcag 32467202  T
Q  114 gatgatgcccgacgagagatg 134  Q
    | ||||||| | |||||||||    
T  32467201 gctgatgcctggcgagagatg 32467181  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 25017522 - 25017585
Alignment:
Q  28 atttcatggctaaattagaagctgcaagttctgatatttggcatgagtttttggagccaccaga 91  Q
    |||| ||||||||||||| | ||| ||||| | | ||||||| |||||||||||||||||||||    
T  25017522 attttatggctaaattaggatctgaaagttataagatttggcgtgagtttttggagccaccaga 25017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 3326360 - 3326430
Alignment:
Q  71 tgagtttttggagccaccagaaggcttacttacgctggtgtaggatgatgcccgacgagagatgtatcaca 141  Q
    ||||||||||||||||| ||| || || ||| || || || | | ||||||||||||||||||||||||||    
T  3326360 tgagtttttggagccacaagacggtttgcttccgttgctgcacgctgatgcccgacgagagatgtatcaca 3326430  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 3514325 - 3514358
Alignment:
Q  58 ctgatatttggcatgagtttttggagccaccaga 91  Q
    |||| |||||||||||||||||||||||||||||    
T  3514325 ctgagatttggcatgagtttttggagccaccaga 3514358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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