View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_13 (Length: 464)
Name: NF5294_low_13
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 25825340 - 25824891
Alignment:
| Q |
1 |
acttcaagaaatcaccaatacttcgcatcggtttaaggcttcttcgtctgaaaagaagtgttttaattcagaagcaggtgaattgttgaaggcaaagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |
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| T |
25825340 |
acttcaagaaatcaccaatacttcgcatcggtttaaggcttcttcgtctgaaaagaagtgttttgattcagaagcaggtgagttgttgaaggcaatgaat |
25825241 |
T |
|
| Q |
101 |
tgcaaggaagttgtagttggtgaaatgctgaagaagagaaggacgaggaagaagcgaagaaattgttatacagaacagaagatagaaactgaatgcaaat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25825240 |
tgcaaggaagttgtagttggtgaaaggctgaagaagagaaggacgaggaagaagcgaagaaattgttatacagaacagaagatagaaactgaatgcaaat |
25825141 |
T |
|
| Q |
201 |
cagatgatttaagtcctgtttctgttcttgaatttgagcgcaagtcttgtgtagcaggtttgtttcttttgcgaatttgatgtgttcaacttttttctgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25825140 |
cagatgatttaagtcctgtttctgttcttgaatttgagcgcaagtcttgtgtagcaggtttgtttcttttgcgaatttgatgtgttcaacttttttctga |
25825041 |
T |
|
| Q |
301 |
tttctagctgcaattgatgcgtcgtgatctttcgtattaagttcatgtttaaatcgactacgagtttgatgaaatcacagtgcgccgactggattttaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
25825040 |
tttctagctgcaattgatgcgtcgtgatctttcgtattaagttcatgtttaaatcaactacgagtttgatgaaatcacagtgtgccgatcggattttaat |
25824941 |
T |
|
| Q |
401 |
catacgctacactaagtataatcatggtgtcactgcgactttgtaaaatt |
450 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
25824940 |
catacgctaaactaagtataatcatggtgtcactgcgattttgtaaaatt |
25824891 |
T |
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