View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_low_15 (Length: 446)

Name: NF5294_low_15
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_low_15
NF5294_low_15
[»] chr5 (10 HSPs)
chr5 (15-227)||(34241328-34241538)
chr5 (272-436)||(34241583-34241747)
chr5 (15-203)||(34233555-34233743)
chr5 (15-160)||(42128052-42128203)
chr5 (14-182)||(42116871-42117058)
chr5 (15-202)||(42122614-42122808)
chr5 (15-202)||(41714285-41714465)
chr5 (15-165)||(41572781-41572929)
chr5 (15-143)||(41618420-41618549)
chr5 (272-322)||(34234338-34234388)
[»] chr2 (4 HSPs)
chr2 (15-202)||(11995166-11995353)
chr2 (15-167)||(12247609-12247764)
chr2 (108-170)||(32682495-32682557)
chr2 (15-54)||(32682456-32682495)
[»] chr4 (1 HSPs)
chr4 (15-179)||(11117294-11117465)
[»] chr8 (1 HSPs)
chr8 (142-179)||(30021068-30021105)
[»] chr3 (2 HSPs)
chr3 (94-170)||(8522263-8522340)
chr3 (15-67)||(8522379-8522431)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 34241328 - 34241538
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataagatggtgcaaatgtc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34241328 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacataagtgaggagaaacaatggtccaaccatgaatcagatggtgcaaatgtc 34241427  T
Q  115 atagttttattattctggttattttctctattgtgtgttagtttttactttctgtttaaaataagttttgatgtgagtgtgacaatctatcgactcattc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34241428 atagttttattattctggttattttctctattgtgtgttagtttttac--tctgtttaaaataagttttgatgtgagtttgacaatctatcgactcattc 34241525  T
Q  215 ttatttgatctag 227  Q
    |||||||||||||    
T  34241526 ttatttgatctag 34241538  T

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Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 272 - 436
Target Start/End: Original strand, 34241583 - 34241747
Alignment:
Q  272 catctaatttaatcagtacaaaattgagttttacaagtacacaaactgaaatgcccagaaagtccaacactagcaggcagcagcatgagcatttcattca 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241583 catctaatttaatcagtacaaaattgagttttacaagtacacaaactgaaatgcccagaaagtccaacactagcaggcagcagcatgagcatttcattca 34241682  T
Q  372 tgttttggatttcccaggatgaaaatggagttagagtttttgattctgtgttattatacttcatc 436  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241683 tgttttggattttccaggatgaaaatggagttagagtttttgattctgtgttattatacttcatc 34241747  T

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Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 34233555 - 34233743
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataagatggtgcaaatgtc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34233555 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacataagtgaggagaaacaatggtccaaccatgaatcagatggtgcaaatgtc 34233654  T
Q  115 atagttttattattctggttattttctctat--tgtgtgttagtttttactttctgtttaaaataagttttgatgtgagtgtgacaatcta 203  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||| ||||||||| ||||||||    
T  34233655 atagttttattattctggttattttctctattgtgtgtgttagtttttac--tctgtttaaaataagttttggtgtgagtgtaacaatcta 34233743  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 42128203 - 42128052
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataaga------tggtgca 108  Q
    |||| ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||     ||||| ||||||||||| |||      |||||||    
T  42128203 ttgttatgatatttggtggtcagcctaagagaagagtgacaaggagaacaagagtgaggagggcacatggttcaaccatgaatcagaatcagatggtgca 42128104  T
Q  109 aatgtcatagttttattattctggttattttctctattgtgtgttagttttt 160  Q
    ||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  42128103 aatgtcatagttttattgttctagttattttctctattgtgtattagttttt 42128052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 42117058 - 42116871
Alignment:
Q  14 attgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataaga------------ 101  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||| || ||| ||||| ||||||||||| |||                
T  42117058 attgtgatgatatttggtggtcagcctaagagaagagtgaaaagaagaacaagaatgagaaggaaccatggtacaaccatgaatcagaatcagaatcaga 42116959  T
Q  102 ------tggtgcaaatgtcatagttttattattctggttattttctctattgtgtgttagt-ttttactttctgtttaaaataagttt 182  Q
          |||||||||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  42116958 atcagatggtgcaaatgtcatagttttattgttgttgttattttctctattgtgtgttagttttttactttcttcttaaaataagttt 42116871  T

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Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 42122808 - 42122614
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataaga------tggtgca 108  Q
    |||| ||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||     ||||| ||||||||||| |||      |||||||    
T  42122808 ttgtcatgatatttggtggtccgcctaagagaagagtgacaaggagaacaagagtgaggagggcacatggttcaaccatgaatcagaatcagatggtgca 42122709  T
Q  109 aatgtcatagttttattattctggttattttctctattgtgtgttag-tttttactttctgtttaaaataagttttga-tgtgagtgtgacaatct 202  Q
    ||||||||||||||||| || | |||| ||| ||| ||||||||| | ||||||||||||||||||||||| | |||| | |||||||||||||||    
T  42122708 aatgtcatagttttattgttgtagttactttatctgttgtgtgttggttttttactttctgtttaaaataa-tcttgattttgagtgtgacaatct 42122614  T

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Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 41714285 - 41714465
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataagatggtgcaaatgtc 114  Q
    |||| ||||||||||||||||| |||||||||| |||||   ||||||||||| ||||||| | ||||||| |||||||||||   ||||||||||||||    
T  41714285 ttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatcgaatggtgcaaatgtc 41714384  T
Q  115 atagttttattattctggttattttctctattgtgtgttagtttttactttctgtttaaaataagttttgatgtgagtgtgacaatct 202  Q
     ||||||||  ||| || || ||| |||||   | ||||||||    | || ||||||||||||| ||||||||||||||||||||||    
T  41714385 gtagttttagaattgtgattttttcctcta--ctttgttagtt----ccttgtgtttaaaataag-tttgatgtgagtgtgacaatct 41714465  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 41572781 - 41572929
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataagatggtgcaaatgtc 114  Q
    ||||||||||  |||| ||||| ||||||  |||||| |  ||||| | ||||||||||||||   ||||  ||||||||||| |||||||||| ||||     
T  41572781 ttgtgatgatggttggaggtcaacctaagcaaagagttacaaggaggataagagtgaggagaattcatggctcaaccatgaattagatggtgcagatgtg 41572880  T
Q  115 atagttttattattctggttattttctctattgtgtgttagtttttacttt 165  Q
    ||||||||||| ||||| ||||||||||  || ||||||||||||| ||||    
T  41572881 atagttttattgttctgattattttctc--ttctgtgttagtttttccttt 41572929  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 41618420 - 41618549
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataagatggtgcaaatgtc 114  Q
    ||||||||||  |||| ||||| ||||||  ||||||||  ||||| ||||||||||||||||   ||||  ||||||||||| |||| ||||| ||||     
T  41618420 ttgtgatgatggttggaggtcaacctaagcaaagagtgacaaggagcacaagagtgaggagaactcatggctcaaccatgaattagatagtgcagatgtg 41618519  T
Q  115 atag-ttttattattctggttattttctct 143  Q
    |||| ||||||| ||||| |||||||||||    
T  41618520 atagtttttattgttctgattattttctct 41618549  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 34234338 - 34234388
Alignment:
Q  272 catctaatttaatcagtacaaaattgagttttacaagtacacaaactgaaa 322  Q
    |||||||| | || |||||||||||||||||| ||||||||||||| ||||    
T  34234338 catctaatcttattagtacaaaattgagttttgcaagtacacaaacagaaa 34234388  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 11995166 - 11995353
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataagatggtgcaaatgtc 114  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| |||     ||||||||    
T  11995166 ttgtgatgatatttggtggtcagcctaaaagaagagtgaaaaggagaacaagagtgagtaggaaccatggtgcaaccatgaatcaga---atcaaatgtc 11995262  T
Q  115 atagttttatt----attctggttattttctctattgtgtgttagtttttactttctgtttaaaataagttttgatgtgagtgtgacaatct 202  Q
     |||| |||||     || ||||||||||||||||||||||||||||||||| || | ||| ||||||| |||||| ||||||||| |||||    
T  11995263 ttagtcttattgttgtttgtggttattttctctattgtgtgttagtttttaccttgtattttaaataag-tttgatctgagtgtgataatct 11995353  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 12247764 - 12247609
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccatgaataag------atggtgca 108  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| ||      ||||||      
T  12247764 ttgtgatgatatttggtggtcagcctaaaagaagagtgaaaaggagaacaagagtgagtaggaaccatggtgcaaccatgaatcagaatcaaatggtggc 12247665  T
Q  109 aatgtcatagttttattattctggttattttctctattgtgtgttagtttttactttct 167  Q
    |||||| |||   | || || ||||||||||||||||||||||||||||||||| ||||    
T  12247664 aatgtcgtag---tcttgttgtggttattttctctattgtgtgttagtttttaccttct 12247609  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 32682495 - 32682557
Alignment:
Q  108 aaatgtcatagttttattattctggttattttctctattgtgtgttagtttttactttctgtt 170  Q
    |||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||    
T  32682495 aaatgtcatagtcttattgttgtgcttattttctctattgtgtgttagtttttactttctgtt 32682557  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 32682456 - 32682495
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaa 54  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  32682456 ttgtgatgataattggtggtcatcctaagagaagagtgaa 32682495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 11117465 - 11117294
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaagagtgaggagaaacaatggtccaaccat------gaataagatggtgca 108  Q
    |||| ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||     ||||| ||| |||      |||| ||||||||||    
T  11117465 ttgtcatgatatttggtggtcagcctaagagaagagtgacaaggagaacaagagtgaggagcgcacatggttcaaacatgaatcagaatcagatggtgca 11117366  T
Q  109 aatgtcatagttttattattctggttattttctctattgtgtgttag-tttttactttctgtttaaaataag 179  Q
    ||||||||||||||||| |  | |||| ||||||  ||| ||||| | ||||||||||||||||||||||||    
T  11117365 aatgtcatagttttattgtcgtagttactttctccgttgggtgttggttttttactttctgtttaaaataag 11117294  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 30021105 - 30021068
Alignment:
Q  142 ctattgtgtgttagtttttactttctgtttaaaataag 179  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  30021105 ctattgtgtgttagtttttaccttctatttaaaataag 30021068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 8522340 - 8522263
Alignment:
Q  94 gaataagatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgtt-agtttttactttctgtt 170  Q
    |||| |||||||||||||||| ||||||| || || |  ||||||||||| |||| ||||  ||||||||||||||||    
T  8522340 gaatcagatggtgcaaatgtcgtagttttgttgttgtaattattttctcttttgtctgttgggtttttactttctgtt 8522263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 8522431 - 8522379
Alignment:
Q  15 ttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacaaga 67  Q
    |||| ||||||||||||||||| |||||||| |||||||| || || ||||||    
T  8522431 ttgtcatgatatttggtggtcagcctaagaggagagtgaaaagaaggacaaga 8522379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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