View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5294_low_16 (Length: 442)
Name: NF5294_low_16
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 355
Target Start/End: Complemental strand, 5012375 - 5012040
Alignment:
| Q |
20 |
taaggtaccattttcctcctcttcggaaggatccttttcatctgcaaaattacttccaggagttacgttccctccttgttgatgtgttgcatctaacaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012375 |
taaggtaccattttcctcctcttcggaaggatccttttcatctgcaaaattacttccaggagttacgttccctccttgttgatgtgttgcatctaacaca |
5012276 |
T |
|
| Q |
120 |
tgcctcgcggggtattgagaaggtgttccagcagtattcccaatatatctaacataacgaactggtatttctttgtgatctacctttttgaggataactt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012275 |
tgcctcgcggggtattgagaaggtgttccagcagtattcccaatatatctagcataacgaactggtatttctttgtgatctacctttttgaggataactt |
5012176 |
T |
|
| Q |
220 |
tttcaaagatgggtgatttactctcaaactgaggcttaatcggtgcaggttttttgccgtgagctagcggttgagacacccataatgcattgatcggtga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5012175 |
tttcaaagatgggtgatttactctcaaactgagtcttaatcggtgcaggttttttgccgtgagctagcggttgagacacccataatgaattgatcggtga |
5012076 |
T |
|
| Q |
320 |
tagcttagcaggcctccctctctttcgtggttgtcc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012075 |
tagcttagcaggcctccctctctttcgtggttgtcc |
5012040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 5012039 - 5011994
Alignment:
| Q |
386 |
ttccattttatcttttttgagtgacgaaacttcttgttcaagtata |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012039 |
ttccattttatcttttttgagtgacgaaacttcttgttcaagtata |
5011994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University