View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_17 (Length: 442)
Name: NF5294_low_17
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_17 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 4 - 425
Target Start/End: Complemental strand, 43777857 - 43777438
Alignment:
| Q |
4 |
atgtcgaataaaatctgaaacatcacagagttgagaatttaagtggagattaagaaaagttacaaaatattaaaaagagttatggcagtgagccatgtga |
103 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43777857 |
atgttgaacaaaatctgaaacatcacagagttgagaatttaagtggagattaagaaaagtta---aatattaaaaagagttatggcagtgagccatgtga |
43777761 |
T |
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| Q |
104 |
aaaaatgttttgcgatgatgttggtgattatgctagttgtagctcaagctcatgctttttcgacatttttgattaattgtcgtttcgaatgcttaactag |
203 |
Q |
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| T |
43777760 |
aaaaatgttttgcgatgatgttggtgattatgctagttgtaactcaagctgatgctttttcgacattttttattaattgtcgtttcgaatgtttaactag |
43777661 |
T |
|
| Q |
204 |
aacatgtttcagagacatttttcattatcgttcctgcgtcaagggatgttataaaatttgcaaacataaaaggttagctattaaatgatagttgatagct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43777660 |
aacatgtttcagagacatttttcattatcgttcctgcgtcaagggatgttataaaatttgcaaacataaaaggttagctattaaataatagttgatagct |
43777561 |
T |
|
| Q |
304 |
catatattgttattcgtaata-ttgatccgatttcatatcatcggaaagagaaaaaagctgatgggattaaagagaaagaaaccgttcaactagctgatg |
402 |
Q |
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| T |
43777560 |
cagatattgttattcgtaatatttgatccgatttcatatcatcggaaagagaaagaagctgatgggattaaagagaaagaaaccgttcaactagctgata |
43777461 |
T |
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| Q |
403 |
ataagaacaatattatctataac |
425 |
Q |
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| T |
43777460 |
ataagaacaatattatctataac |
43777438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 43781403 - 43781181
Alignment:
| Q |
4 |
atgtcgaataaaatctgaaacatcacagagttgagaatttaagtggagattaagaaaagttacaaaatattaaaaagagttatggcagtgagccatgtga |
103 |
Q |
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|||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |
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| T |
43781403 |
atgttgaacaaaatctgaaacatcacaaagttgagaattttagtggagattaagaaaagttaaaaaatattaaaaagagttatggtagtgagccaagtga |
43781304 |
T |
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| Q |
104 |
aaaaatgttttgcgatgatgttggtgattatgctagttgtagctcaagctcatgctttttcgacatttttgattaattgtcgtttcgaatgcttaactag |
203 |
Q |
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| T |
43781303 |
aaaaatgttttacgatgatgttggtgattatgctagttgtaactcaacctcatgctttttcgccattt---attgaatgtcgtgtcggatgtttaacgat |
43781207 |
T |
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| Q |
204 |
aacatgtttcagagacatttttcatt |
229 |
Q |
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| T |
43781206 |
aacatgttttagagacattttccatt |
43781181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 43770412 - 43770344
Alignment:
| Q |
13 |
aaaatctgaaacatcacagagttgagaatttaagtggagattaagaaaagttacaaaatattaaaaaga |
81 |
Q |
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| T |
43770412 |
aaaatctgaaacatcacaaagttgagaattttagtggtgattaagaaaagttaaaaaatattaaaaaga |
43770344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 43780883 - 43780845
Alignment:
| Q |
387 |
gttcaactagctgatgataagaacaatattatctataac |
425 |
Q |
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| T |
43780883 |
gttcaactaactgataataagaacaatattatctataac |
43780845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 18159221 - 18159170
Alignment:
| Q |
295 |
ttgatagctcatatattgttattcgtaatattgatccgatttcatatcatcg |
346 |
Q |
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| T |
18159221 |
ttgatagctcagatattgttattcgtgatattgatccgattttatatcatcg |
18159170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 419206 - 419157
Alignment:
| Q |
295 |
ttgatagctcatatattgttattcgtaatattgatccgatttcatatcat |
344 |
Q |
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| T |
419206 |
ttgatagctcagatattgttattcgtgatattgattcgattttatatcat |
419157 |
T |
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