View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_low_19 (Length: 403)

Name: NF5294_low_19
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_low_19
NF5294_low_19
[»] chr5 (3 HSPs)
chr5 (1-397)||(34646222-34646615)
chr5 (1-397)||(34665916-34666309)
chr5 (3-381)||(19648952-19649321)
[»] chr4 (2 HSPs)
chr4 (3-397)||(45645420-45645811)
chr4 (196-230)||(1390499-1390533)
[»] chr8 (8 HSPs)
chr8 (3-385)||(40717928-40718304)
chr8 (173-373)||(14183338-14183535)
chr8 (180-292)||(14192295-14192404)
chr8 (6-65)||(14183174-14183233)
chr8 (186-235)||(14201301-14201350)
chr8 (18-58)||(14192124-14192164)
chr8 (324-380)||(14192436-14192492)
chr8 (18-58)||(14201142-14201182)
[»] chr6 (2 HSPs)
chr6 (175-394)||(34303063-34303279)
chr6 (6-63)||(34302885-34302942)


Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 34646222 - 34646615
Alignment:
Q  1 cggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34646222 cggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatact 34646321  T
Q  101 cagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctactnnnnnnngacccagttttctactttttgacattacaagca 200  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |       ||||| |||||||||||||||||||||||||||    
T  34646322 cagttttggagatgccgctgtggtttcgggtgacg---gtgttgtgtcaactcctctaataaaaaaagaccccgttttctactttttgacattacaagca 34646418  T
Q  201 tttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgattcaggtacaacattgacactta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34646419 tttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgattcaggtacaacattgacactta 34646518  T
Q  301 taccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgcta 397  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34646519 taccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgcta 34646615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 34665916 - 34666309
Alignment:
Q  1 cggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34665916 cggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatact 34666015  T
Q  101 cagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctactnnnnnnngacccagttttctactttttgacattacaagca 200  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |       ||||| |||||||||||||||||||||||||||    
T  34666016 cagttttggagatgccgctgtggtttcgggtgacg---gtgttgtgtcaactcctctaataaaaaaagaccccgttttctactttttgacattacaagca 34666112  T
Q  201 tttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgattcaggtacaacattgacactta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34666113 tttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgattcaggtacaacattgacactta 34666212  T
Q  301 taccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgcta 397  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34666213 taccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgcta 34666309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 381
Target Start/End: Complemental strand, 19649321 - 19648952
Alignment:
Q  3 gtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatactca 102  Q
    |||||||| | ||||||||||  ||| ||||||||||||||||| ||||| |||||| |||||||||||      || || |||    | || | |||||    
T  19649321 gtgtctcttacaacacaattgaaatcttcaattggtggtaaattttcttactgtttgttgccattgttggtt---gactcgaacaagacgagcaaactca 19649225  T
Q  103 gttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctactnnnnnnngaccc---agttttctactttttgacattacaagc 199  Q
     |||||||||||||||||||||||| |||||||   ||||||||||||||||| |  |       |||||   || |||||||| |||||| ||| ||||    
T  19649224 attttggagatgccgctgtggtttctggtgacg---gtgttgtgtcaactccttttgtgaaaaaagaccctcaagctttctactatttgacgttagaagc 19649128  T
Q  200 atttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgattcaggtacaacattgacactt 299  Q
    |||||||||||||||||||||| ||||||||| ||  | ||    || ||    ||| || |||||||||||| ||||||| |||||||||||||| |||    
T  19649127 atttagtgttggaaacaaaagaatagaatttgaag--tgtt----agatgacagtgaggagggtaacatcatacttgattctggtacaacattgactctt 19649034  T
Q  300 ataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaac 381  Q
     |||| ||  | || |||||||| |||||||| || || |   |  ||||||||||||||||||||||||||||||||||||    
T  19649033 ttaccgtctcatgtttatactaatttggaatcggcggtagcacaactggtgaaactagatcgtgttgatgatcctaatcaac 19648952  T

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Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 3 - 397
Target Start/End: Original strand, 45645420 - 45645811
Alignment:
Q  3 gtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatactca 102  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||| || | |||| |||||    
T  45645420 gtgtctctaataacacaattgggatcatcaattggtggtgaattctcttattgtttggtgccattggataacaaggagtcaaacacaacgagtaaactca 45645519  T
Q  103 gttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctactnnnnnnngaccc---agttttctactttttgacattacaagc 199  Q
    |||||||||||||||||||||||||||||||| |   |||||||||||||||| || |       |||||   ||||| |||| ||||||||||| ||||    
T  45645520 gttttggagatgccgctgtggtttcgggtgacaa---tgttgtgtcaactcctataataaaaaaagacccttcagtttactacgttttgacattagaagc 45645616  T
Q  200 atttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgattcaggtacaacattgacactt 299  Q
    |||||||||||||||||||||||||||||||||||| ||||| || | |||||||   ||||||||||| |||||||||||||||||||||||||   ||    
T  45645617 atttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatggtgat---gaaggtaacattataattgattcaggtacaacattgatggtt 45645713  T
Q  300 ataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgcta 397  Q
     ||||| | ||||| ||||  || ||||||||||||||||| ||||||||||||||| | ||||| ||||||||| || ||| |||| ||||||||||    
T  45645714 ttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaaacgtgtggatgatccttataaactattcggcctatgcta 45645811  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 1390499 - 1390533
Alignment:
Q  196 aagcatttagtgttggaaacaaaagagtagaattt 230  Q
    |||||||||||||||||||||||||||||||||||    
T  1390499 aagcatttagtgttggaaacaaaagagtagaattt 1390533  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 385
Target Start/End: Original strand, 40717928 - 40718304
Alignment:
Q  3 gtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatactca 102  Q
    |||||||| ||||||||| | ||||| |||||||||   |||||||||||||||||| | |||||||        |||||||||    |||| | |||||    
T  40717928 gtgtctcttataacacaacttggatcgtcaattggttcaaaattctcttattgtttgcttccattgtctctt---gagtcaaacaggacaagcaaactca 40718024  T
Q  103 gttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctactnnnnnnngaccc---agttttctactttttgacattacaagc 199  Q
    ||||||||||||||||||||||||| ||||| ||   |||| ||||||||||| || |       |||||   ||||||||||| |||||||||  ||||    
T  40718025 gttttggagatgccgctgtggtttctggtgagga---tgttttgtcaactcctatagtgaaaaaagaccccacagttttctactatttgacattggaagc 40718121  T
Q  200 atttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgattcaggtacaacattgacactt 299  Q
    |||||||||||||||||||||| ||||||||||  | |||||   |  ||||  |||||| ||||||||||||||||||||||||||||| |||||  ||    
T  40718122 atttagtgttggaaacaaaagaatagaatttggcagatcttc---aaatggtagtgatgagggtaacatcataattgattcaggtacaacgttgacgatt 40718218  T
Q  300 ataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaatt 385  Q
     | |||||  |  | |||| ||| ||||||||||| ||||  || |  ||||||||||| |||||||||||||| | |||||||||    
T  40718219 ttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatccaactcaacaatt 40718304  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 373
Target Start/End: Original strand, 14183338 - 14183535
Alignment:
Q  173 agttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcata 272  Q
    ||||||||||| |||||||||  |||||||||||||||| ||||||||| ||||||||| ||| |||||   |  ||||| | |||||||||||||||||    
T  14183338 agttttctactatttgacattggaagcatttagtgttggtaacaaaagaatagaatttgaagggtcttc---aaatggtggtcatgaaggtaacatcata 14183434  T
Q  273 attgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatc 372  Q
    ||||||||||||||||| |||||  |||| ||| | || || |||| ||| ||||||||||| ||| |||| |||||||||||  | |||||| ||||||    
T  14183435 attgattcaggtacaacgttgacggttattccaactgatgtttataataatttggaatcagcggtgttggaattggtgaaactgaagcgtgttaatgatc 14183534  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 14192295 - 14192404
Alignment:
Q  180 tactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgatt 279  Q
    |||| |||||||||  ||||||||||||||||||| | |||||||||| |||||||   |||  ||  ||||||| |||| |||||||||||||||||||    
T  14192295 tactatttgacattggaagcatttagtgttggaaatagaagagtagaaattggaggag-ttccaaa--tggtgataatgagggtaacatcataattgatt 14192391  T
Q  280 caggtacaacatt 292  Q
    | |||||||||||    
T  14192392 cgggtacaacatt 14192404  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 14183174 - 14183233
Alignment:
Q  6 tctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgcca 65  Q
    ||||| || |||||||||||||||||||||| ||  |||||||||||||||||| |||||    
T  14183174 tctcttattacacaattgggatcatcaattgatgcaaaattctcttattgtttgttgcca 14183233  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 14201301 - 14201350
Alignment:
Q  186 ttgacattacaagcatttagtgttggaaacaaaagagtagaatttggagg 235  Q
    ||||||||| ||||||||||||| |||||||||  | |||||||||||||    
T  14201301 ttgacattagaagcatttagtgtgggaaacaaattaatagaatttggagg 14201350  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 14192124 - 14192164
Alignment:
Q  18 caattgggatcatcaattggtggtaaattctcttattgttt 58  Q
    ||||||||||| |||| ||||||||||||||| ||||||||    
T  14192124 caattgggatcctcaactggtggtaaattctcctattgttt 14192164  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 14192436 - 14192492
Alignment:
Q  324 ttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaa 380  Q
    |||||||| |||||||| |||||||||||  |||| |||||||| ||||||| ||||    
T  14192436 ttggaatctgctgtggtagatttggtgaagttagaacgtgttgacgatcctactcaa 14192492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 14201142 - 14201182
Alignment:
Q  18 caattgggatcatcaattggtggtaaattctcttattgttt 58  Q
    ||||||||  ||||||||||||| |||||||||||||||||    
T  14201142 caattgggtacatcaattggtggaaaattctcttattgttt 14201182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 175 - 394
Target Start/End: Original strand, 34303063 - 34303279
Alignment:
Q  175 ttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataat 274  Q
    ||||||||| ||||||| || |||||||||| |||||| |||||||||||||||||| ||| || ||  ||   |||| ||| |||||||||||||||||    
T  34303063 ttttctactatttgacaatagaagcatttagcgttggagacaaaagagtagaatttgcagggtcctcaaaa---ggtgttgaagaaggtaacatcataat 34303159  T
Q  275 tgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcct 374  Q
    ||||||| ||||||   ||||| || ||||||| || || |||||||| ||| | |||||  | || |||||||||| |||||| || ||||||||||||    
T  34303160 tgattcaagtacaattgtgacatttgtaccatctgatgtttatactaaattgaattcagcaatcgtagatttggtgacactagaacgagttgatgatcct 34303259  T
Q  375 aatcaacaattcagcctatg 394  Q
    ||||||||||| || |||||    
T  34303260 aatcaacaatttagtctatg 34303279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 34302885 - 34302942
Alignment:
Q  6 tctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgc 63  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  34302885 tctctaataacacaattgggaccgtcaattggtggtaaattctcttattgtttggtgc 34302942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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