View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_low_2 (Length: 692)

Name: NF5294_low_2
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_low_2
NF5294_low_2
[»] chr4 (1 HSPs)
chr4 (1-682)||(53788249-53788930)


Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 682
Target Start/End: Original strand, 53788249 - 53788930
Alignment:
Q  1 atggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctaagaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  53788249 atggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctgagaaac 53788348  T
Q  101 cgtggtgagtaatggtacccactcactctatctttgctatgatgtgaagtgtgagaaccggggatcccaatataagtgagtcgaacaccacactttaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||     
T  53788349 cgtggtgagtaatggtacccactcactctatctttgctatgatgtgaagtgtgagaaccgggaatcccaatataagtgagtccaacaccacactttaacc 53788448  T
Q  201 taaaaccttaagatattgaattttatggatcctataatttataaaattcaatccccannnnnnnaagtaaggtgaaacttttaattcacactttctacac 300  Q
    |||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||    
T  53788449 taaaaccttaagatattgga-tttatgggtcctataatttataaaattcaatccccatttttctaagtaacgtgaaacttttaattcacactttctacac 53788547  T
Q  301 aacaatcttcgtctcatgtataaatataagtatgtcaattcattatgctatcactcaaggaagttttttcatttacatacacttacttgcatcgttggtg 400  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||  |||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  53788548 aacaatcttcttctcatgtgtaaatataagtatgtcaattcattatgctcccacttaaggaagttttttcatctacatacacttacttgcaccgttggtg 53788647  T
Q  401 tgacattcagcagagcacgccgtcaaaacacattgatagaaagactttcaacacaaa-aaccgatcaaattcttattaaatcatgatgtaagataccacc 499  Q
    ||||||||||  ||||||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  53788648 tgacattcagtggagcacgccatcaaaacactgtgatagaaagactttcaacacaaagaaccgatcaaattcttattaaatcatcatgtaagataccacc 53788747  T
Q  500 tttgtgtcaagatggggagtccggaggatcatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggccttttt 599  Q
    ||||    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53788748 tttgcaaaaagatggggagtccggaggattatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggccttttt 53788847  T
Q  600 gtatgattcatcaataccatactatgtcatttgattgtcgtcttctttttattctattattccaatatacttctctcattcat 682  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53788848 gtatgattcatcaataccataccatgtcatttgattgtcgtcttctttttattctattattccactatacttctctcattcat 53788930  T

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