View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_27 (Length: 336)
Name: NF5294_low_27
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 821431 - 821764
Alignment:
| Q |
1 |
aatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
821431 |
aatgcgagagttttagaaactatgacaatctggagcaacaataaacaatctgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtc |
821530 |
T |
|
| Q |
101 |
aactttcattttattgataacatatatgattatgtaagtattatttttcctattctctcatttgttccattttcttctaccatgaaattgttcgatttgg |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
821531 |
aactttcattttattgataacatatacgattatgtaagtattatttttcctattctctcatttgttccattttcttctaccatgaaactgttcgatttgg |
821630 |
T |
|
| Q |
201 |
tggtttgatgaaatatgtgctgttatgaaagtcgtcctaaactttgtctcggtgcacaaattaagaaatattttatttaatgcaagtgacttatgagtag |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
821631 |
tggttttatgaaatatgtgctgttatgaaagtcgtcctaaactttgtctcggtgcacaaattaagaaatattttatttaatgcaagtgacttatgagtag |
821730 |
T |
|
| Q |
301 |
tgaaatcttttcattactcttctatttctatttt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
821731 |
tgaaatcttttcattactcttctatttctatttt |
821764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 973753 - 973652
Alignment:
| Q |
7 |
agagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaacttt |
106 |
Q |
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||||||||| ||||||||| |||||||||||||| ||||| || ||| |||||||||| ||||||||||||||||| |||||||||||||||||| |||| |
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| T |
973753 |
agagttttacaaactatgaaaatctggagcaacagtaaacgatctgatatagaaagtcaattatctccatgcccaaaggcttctgcaacatgtcagcttt |
973654 |
T |
|
| Q |
107 |
ca |
108 |
Q |
| |
|
|| |
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|
| T |
973653 |
ca |
973652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 410575 - 410693
Alignment:
| Q |
1 |
aatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtc |
100 |
Q |
| |
|
||||| ||||||||| ||||||||| |||| | ||||||| ||||| | | || ||||||| | |||||| |||| |||||||||||| ||||||||| |
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| T |
410575 |
aatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtc |
410674 |
T |
|
| Q |
101 |
aactttcattttattgata |
119 |
Q |
| |
|
|||||||| |||||||||| |
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| T |
410675 |
aactttcaatttattgata |
410693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 957733 - 957656
Alignment:
| Q |
140 |
attatttttcctattctctcatttgttccattttcttctaccatgaaattgttcgatttggtggtttgatgaaatatg |
217 |
Q |
| |
|
|||||||| ||||||| || |||||| |||| ||||||||||||||||||| ||||| ||||||||||||| |||| |
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|
| T |
957733 |
attattttctctattctgtcttttgtttcattagcttctaccatgaaattgttggatttagtggtttgatgaactatg |
957656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 962483 - 962423
Alignment:
| Q |
272 |
tttatttaatgcaagtgacttatgagtagtgaaatcttttcattactcttctatttctatt |
332 |
Q |
| |
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||||||||||||| | | ||||||||| ||||||||||| | | |||||||||||||||| |
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|
| T |
962483 |
tttatttaatgcacggaagttatgagtattgaaatcttttaactcctcttctatttctatt |
962423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 45810223 - 45810009
Alignment:
| Q |
9 |
agttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttca |
108 |
Q |
| |
|
||||||||||||||||||||| ||| ||| || |||| | | ||||||||| | ||||||| |||| |||||||||||||||| ||||||||||||| |
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|
| T |
45810223 |
agttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttcatgtccaagggcttctgcaaaatgtcaactttca |
45810124 |
T |
|
| Q |
109 |
ttttattgataacatatatgattatgtaagtattatttttcctattctctcatttgttccattttcttctaccatgaaattgttcgatttggtggtttga |
208 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| |||||||||| |||||| |||| |||||||| |||||||||| ||||||| |||||| |
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| T |
45810123 |
atttattgataacatatatga-tatgtaagtagtattttctctattctctcctttgtttcattagcttctaccttgaaattgttggatttggctgtttga |
45810025 |
T |
|
| Q |
209 |
tgaaatatgtgctgtt |
224 |
Q |
| |
|
|||| | ||||||||| |
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|
| T |
45810024 |
tgaactgtgtgctgtt |
45810009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 48675197 - 48675085
Alignment:
| Q |
9 |
agttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttca |
108 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||| | ||| | |||||||||| |||||| |||| |||||||| ||||||||||||||||||||| |
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|
| T |
48675197 |
agttttacaaactatgacaatatggagcgacaaggaccaacctcaaatagaaagggaattatcctcatgtccaagggcctctgcaacatgtcaactttca |
48675098 |
T |
|
| Q |
109 |
ttttattgataac |
121 |
Q |
| |
|
|||||||||||| |
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| T |
48675097 |
gtttattgataac |
48675085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 10114682 - 10114621
Alignment:
| Q |
271 |
ttttatttaatgcaagtgacttatgagtagtgaaatcttttcattactcttctatttctatt |
332 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
10114682 |
ttttttttaatgcaaaagacttatgagtagtgaaatcttttcactcctcttctatttctatt |
10114621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 10116498 - 10116363
Alignment:
| Q |
1 |
aatgcgagagttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | | |||| | | |||||||||| ||||| |||| |||||||||||| |||||||| |
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| T |
10116498 |
aatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgta |
10116399 |
T |
|
| Q |
101 |
aactttcattttattgataacatatatgattatgtaagta |
140 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||| |
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|
| T |
10116398 |
aactttca----attaaaaacatatatgattatgtaagta |
10116363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 12105613 - 12105718
Alignment:
| Q |
9 |
agttttagaaactatgacaatctggagcaacaataaacaatttgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaactttca |
108 |
Q |
| |
|
||||||||||| |||| |||||||| || | ||||| | |||||||||||| |||||| | | || |||| |||||||||||||||||||||||| |
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|
| T |
12105613 |
agttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaacctcgtgttcaagagcttctgcaacatgtcaactttca |
12105712 |
T |
|
| Q |
109 |
ttttat |
114 |
Q |
| |
|
||||| |
|
|
| T |
12105713 |
atttat |
12105718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 36199516 - 36199569
Alignment:
| Q |
97 |
tgtcaactttcattttattgataacatatatgat-tatgtaagtattatttttc |
149 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||||||| || ||||| |
|
|
| T |
36199516 |
tgtcaactttcagtttattgataacatataagatatatgtaagtagtagttttc |
36199569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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