View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_35 (Length: 305)
Name: NF5294_low_35
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 53083139 - 53082955
Alignment:
| Q |
17 |
agaaaagtcctttatgtttatgcctatctatacctcgaggatgagaatgtaccttggtgaatcaaccatcttgttacctcagccaaacaagataaaaagt |
116 |
Q |
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| T |
53083139 |
agaaaagtcctttatgtttatgcctatctatacctcgaggatgagaatgtaccttggtgaatcaaccatcttgttacctcagccaaacaaaataaaaagt |
53083040 |
T |
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| Q |
117 |
ttagttttaattttc--tgtgatctctttgtttaatactgtaatgttctatggtgattcagcgcccatcatagtccacctcaacc |
199 |
Q |
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| T |
53083039 |
ttagttttaattttctgtgtgatctctttgtttaatactgtaatgttctatggtgattcagcgcccatcatagtccacctcaacc |
53082955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 53082919 - 53082858
Alignment:
| Q |
235 |
tctattattttaattcaagctttaaaggatttatttatgatgaatttagaacgcagaataat |
296 |
Q |
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| T |
53082919 |
tctattattttaattcaagcttcaaaggatttatttatgatgaatttagaacgcagaataat |
53082858 |
T |
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