View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_36 (Length: 300)
Name: NF5294_low_36
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 7181934 - 7182217
Alignment:
| Q |
1 |
gtgtagtgatacgtgtttcgttattttgattggttgttcatgttgccctactactgttgttacaatttcaagaatttgcactttattttattttaaaaat |
100 |
Q |
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| T |
7181934 |
gtgtagtgatatgtgtttcgttattttgattggttgttcatgttgccctactactgttgttacaatttcaagaatttgcactttattttattttaaaaat |
7182033 |
T |
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| Q |
101 |
ttgcaactgtaaattctttatgctcactttgacacccaaannnnnnngttaaaacttcgccacagtttctagaaaataattctaatgatataattatgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7182034 |
ttgcaactgtaaattctttatgctcactttgacacccaaatttttttgttaaaacttcgccacagtttctagaaaataattctaatgatataattatgag |
7182133 |
T |
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| Q |
201 |
gggacaacaatattttagttttcctgaaatactcaaaatctcaaggggggacttgatttacatttgacaaatttctgcagaataat |
286 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||| ||||||| |||||||| |
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| T |
7182134 |
gggacaacaatattttagttttcttgaaatactcaaaatctcaa-gtgggacttga-ttacatttgacacatttctggagaataat |
7182217 |
T |
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