View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_low_39 (Length: 275)

Name: NF5294_low_39
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_low_39
NF5294_low_39
[»] chr5 (20 HSPs)
chr5 (134-270)||(36017292-36017428)
chr5 (7-49)||(22936707-22936749)
chr5 (7-50)||(41876520-41876563)
chr5 (7-51)||(40915921-40915966)
chr5 (7-50)||(37215354-37215397)
chr5 (7-49)||(19689873-19689914)
chr5 (7-49)||(41306293-41306335)
chr5 (9-50)||(26548402-26548442)
chr5 (7-40)||(26752477-26752510)
chr5 (9-50)||(28565697-28565737)
chr5 (7-51)||(31864029-31864074)
chr5 (7-47)||(19686490-19686529)
chr5 (9-49)||(26551961-26552000)
chr5 (9-49)||(28562130-28562169)
chr5 (9-49)||(34652525-34652564)
chr5 (7-56)||(42063243-42063294)
chr5 (9-51)||(3195403-3195444)
chr5 (7-49)||(43492070-43492112)
chr5 (9-50)||(30764547-30764587)
chr5 (7-51)||(12058256-12058299)
[»] chr7 (21 HSPs)
chr7 (134-270)||(28889117-28889253)
chr7 (7-54)||(11919618-11919665)
chr7 (7-49)||(23224675-23224717)
chr7 (7-51)||(13449549-13449593)
chr7 (9-50)||(18560816-18560857)
chr7 (7-49)||(6603758-6603800)
chr7 (9-51)||(23467012-23467053)
chr7 (12-50)||(37415167-37415205)
chr7 (7-40)||(4543107-4543140)
chr7 (7-40)||(4547179-4547212)
chr7 (9-50)||(22232394-22232434)
chr7 (9-50)||(22254305-22254345)
chr7 (7-40)||(45286848-45286881)
chr7 (9-49)||(5826477-5826516)
chr7 (10-49)||(18559979-18560018)
chr7 (9-51)||(26557813-26557856)
chr7 (154-260)||(28886306-28886412)
chr7 (7-48)||(13842943-13842983)
chr7 (7-36)||(37415206-37415235)
chr7 (7-40)||(45290259-45290292)
chr7 (9-49)||(11825124-11825163)
[»] chr1 (11 HSPs)
chr1 (7-51)||(28111371-28111415)
chr1 (7-49)||(23021687-23021729)
chr1 (7-49)||(27536298-27536340)
chr1 (7-49)||(2794542-2794584)
chr1 (7-49)||(20448147-20448189)
chr1 (7-49)||(20533914-20533956)
chr1 (7-49)||(49498268-49498310)
chr1 (7-40)||(1950222-1950255)
chr1 (7-50)||(45960511-45960554)
chr1 (7-49)||(31205152-31205194)
chr1 (7-49)||(37183631-37183673)
[»] scaffold0962 (1 HSPs)
scaffold0962 (7-50)||(3047-3090)
[»] scaffold0005 (1 HSPs)
scaffold0005 (7-50)||(293332-293375)
[»] chr4 (25 HSPs)
chr4 (7-50)||(18911819-18911862)
chr4 (7-49)||(34319684-34319726)
chr4 (7-48)||(15445120-15445161)
chr4 (7-50)||(34017549-34017592)
chr4 (7-49)||(5673208-5673250)
chr4 (7-49)||(12238572-12238614)
chr4 (7-49)||(40902840-40902882)
chr4 (7-50)||(27676811-27676854)
chr4 (7-49)||(52530700-52530742)
chr4 (7-40)||(44808731-44808764)
chr4 (7-40)||(48637820-48637853)
chr4 (7-51)||(15429608-15429652)
chr4 (7-51)||(15436222-15436266)
chr4 (9-49)||(17670623-17670662)
chr4 (7-49)||(27014575-27014617)
chr4 (7-49)||(29325136-29325178)
chr4 (7-49)||(40616573-40616615)
chr4 (22-52)||(44165120-44165150)
chr4 (22-50)||(12786453-12786481)
chr4 (10-50)||(15432397-15432437)
chr4 (7-51)||(24150987-24151030)
chr4 (7-51)||(25962373-25962416)
chr4 (22-50)||(35510322-35510350)
chr4 (7-51)||(38283245-38283288)
chr4 (22-50)||(52006284-52006312)
[»] chr2 (15 HSPs)
chr2 (7-50)||(25959456-25959499)
chr2 (7-50)||(30274535-30274578)
chr2 (7-49)||(8888931-8888973)
chr2 (7-51)||(11347660-11347704)
chr2 (7-50)||(25871079-25871122)
chr2 (7-47)||(25874476-25874516)
chr2 (7-50)||(33310961-33311004)
chr2 (7-40)||(24238667-24238700)
chr2 (9-49)||(42368466-42368507)
chr2 (7-40)||(45499135-45499168)
chr2 (7-50)||(10601148-10601191)
chr2 (7-38)||(29440790-29440821)
chr2 (22-51)||(25138690-25138719)
chr2 (22-51)||(25820606-25820635)
chr2 (9-49)||(43207651-43207692)
[»] chr6 (14 HSPs)
chr6 (7-49)||(1125502-1125544)
chr6 (7-49)||(9954277-9954319)
chr6 (9-51)||(30655774-30655816)
chr6 (7-50)||(26942200-26942242)
chr6 (7-49)||(34502661-34502702)
chr6 (7-40)||(23008376-23008409)
chr6 (7-40)||(23779955-23779988)
chr6 (7-50)||(5737827-5737871)
chr6 (7-49)||(11187963-11188006)
chr6 (9-40)||(23381946-23381977)
chr6 (9-40)||(23384526-23384557)
chr6 (7-40)||(3596555-3596588)
chr6 (7-40)||(24155139-24155172)
chr6 (9-49)||(11192348-11192387)
[»] chr3 (27 HSPs)
chr3 (7-49)||(2873963-2874005)
chr3 (7-49)||(35412904-35412946)
chr3 (7-50)||(539225-539268)
chr3 (7-50)||(11190925-11190968)
chr3 (11-50)||(28266333-28266372)
chr3 (9-49)||(22993450-22993490)
chr3 (7-49)||(12541053-12541095)
chr3 (7-49)||(50461303-50461345)
chr3 (7-45)||(54724140-54724178)
chr3 (9-49)||(7486972-7487013)
chr3 (7-40)||(10106362-10106395)
chr3 (7-40)||(16184445-16184478)
chr3 (7-40)||(24125898-24125931)
chr3 (7-40)||(24129175-24129208)
chr3 (9-49)||(2784430-2784469)
chr3 (9-49)||(6434527-6434567)
chr3 (7-39)||(8461257-8461289)
chr3 (7-50)||(30691134-30691178)
chr3 (7-49)||(18883534-18883575)
chr3 (9-50)||(2775895-2775936)
chr3 (9-50)||(2779137-2779178)
chr3 (7-40)||(6922919-6922952)
chr3 (9-50)||(10960215-10960255)
chr3 (9-50)||(10963722-10963762)
chr3 (7-40)||(43927248-43927281)
chr3 (7-40)||(53816228-53816261)
chr3 (22-50)||(23298365-23298393)
[»] scaffold1785 (1 HSPs)
scaffold1785 (7-49)||(229-271)
[»] scaffold0690 (1 HSPs)
scaffold0690 (7-49)||(7481-7523)
[»] scaffold0035 (1 HSPs)
scaffold0035 (7-49)||(62839-62881)
[»] chr8 (10 HSPs)
chr8 (7-51)||(10664262-10664305)
chr8 (7-50)||(8911962-8912004)
chr8 (7-49)||(16954086-16954128)
chr8 (7-49)||(23597518-23597560)
chr8 (7-51)||(18825653-18825697)
chr8 (7-37)||(5584211-5584241)
chr8 (9-51)||(14188482-14188523)
chr8 (10-51)||(25591243-25591285)
chr8 (9-49)||(20262866-20262905)
chr8 (9-49)||(21049496-21049535)
[»] scaffold0427 (1 HSPs)
scaffold0427 (9-48)||(3554-3593)
[»] scaffold0250 (1 HSPs)
scaffold0250 (7-50)||(19710-19753)
[»] scaffold0737 (1 HSPs)
scaffold0737 (9-51)||(7106-7147)
[»] scaffold0412 (1 HSPs)
scaffold0412 (7-49)||(449-491)
[»] scaffold0381 (1 HSPs)
scaffold0381 (7-49)||(5166-5208)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-47)||(118214-118252)
[»] scaffold1208 (1 HSPs)
scaffold1208 (7-40)||(497-530)
[»] scaffold0214 (1 HSPs)
scaffold0214 (9-50)||(20378-20418)
[»] scaffold0015 (1 HSPs)
scaffold0015 (22-54)||(198485-198517)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 36017292 - 36017428
Alignment:
Q  134 caaatgactgggctagaaaagtgtttaatgacattgacaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaaagattacaaagaagg 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36017292 caaatgactgggctagaaaagtgtttaatgacattgacaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaaaaattacaaagaagg 36017391  T
Q  234 atcactagagatcaaagattggccaacctttgcttct 270  Q
    ||||||||||||||||||||||||||| |||||||||    
T  36017392 atcactagagatcaaagattggccaacttttgcttct 36017428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 22936749 - 22936707
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22936749 actacttcgatagtatttagtacacttgctaaaatatctatca 22936707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 41876563 - 41876520
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  41876563 actacttcgatagtatttagtacacttgctaaaaaatctatcaa 41876520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 40915966 - 40915921
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaat-atctatcaat 51  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  40915966 actacttcgatagtatttagtacacttgctaaaataatctatcaat 40915921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 37215354 - 37215397
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||| ||||||||||||||||||||||| |||||||||    
T  37215354 actacttcgacagtatttagtacacttgctaaaaaatctatcaa 37215397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 19689873 - 19689914
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  19689873 actacttcgatagt-tttagtacacttgctaaaatatctatca 19689914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 41306335 - 41306293
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||||||||||||||||| |||||||||||| ||||||||    
T  41306335 actacttcgatagtatttagtgcacttgctaaaaaatctatca 41306293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 26548402 - 26548442
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  26548402 tacttcgatagt-tttagtacacttgctaaaatatctatcaa 26548442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 26752510 - 26752477
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  26752510 actacttcgatagtatttagtacacttgctaaaa 26752477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 28565737 - 28565697
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  28565737 tacttcgatagt-tttagtacacttgctaaaatatctatcaa 28565697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 31864029 - 31864074
Alignment:
Q  7 actacttcgatagtatttagtacacttgct-aaaatatctatcaat 51  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||    
T  31864029 actacttcaatagtatttagtacacttgctaaaaatatctatcaat 31864074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 19686490 - 19686529
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctat 47  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  19686490 actacttcgatagt-tttagtacacttgctaaaatatctat 19686529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 26551961 - 26552000
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  26551961 tacttcgatagt-tttagtacacttgctaaaatatctatca 26552000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 28562169 - 28562130
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  28562169 tacttcgatagt-tttagtacacttgctaaaatatctatca 28562130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 34652564 - 34652525
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  34652564 tacttcgatagt-tttagtacacttgctaaaatatctatca 34652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 42063243 - 42063294
Alignment:
Q  7 actacttcgatagtattt--agtacacttgctaaaatatctatcaatcattt 56  Q
    ||||||||||||||||||  |||||||||||||||| |||||||| ||||||    
T  42063243 actacttcgatagtatttttagtacacttgctaaaaaatctatcagtcattt 42063294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 3195403 - 3195444
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  3195403 tacttcgatagt-tttagtacacttgctaaaatatttatcaat 3195444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 43492070 - 43492112
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||| |||||||||  |||||||    
T  43492070 actacttcgatagtatttagtacatttgctaaaaattctatca 43492112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 30764547 - 30764587
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  30764547 tacttcgatagt-tttagtacacttgctaaaatatttatcaa 30764587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 12058299 - 12058256
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||||||||||||||| |||| ||||| |||||||||    
T  12058299 actacttcgatagtatttagtacagttgccaaaat-tctatcaat 12058256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 28889117 - 28889253
Alignment:
Q  134 caaatgactgggctagaaaagtgtttaatgacattgacaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaaagattacaaagaagg 233  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28889117 caaatgagtgggctagaatagtgtttaatgacattgaaaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaaagattacaaagaagg 28889216  T
Q  234 atcactagagatcaaagattggccaacctttgcttct 270  Q
    ||||||||||||||||||||||||||| |||||||||    
T  28889217 atcactagagatcaaagattggccaacttttgcttct 28889253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 11919665 - 11919618
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaatcat 54  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  11919665 actacttcgatagtatttagtagacttgctaaaatatctatcaatcat 11919618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 23224717 - 23224675
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23224717 actacttcgatagtatttagtacacttgctaaaatatctatca 23224675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 13449593 - 13449549
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  13449593 actacttcgatagtatttggtacacttgctaaaatatctatcaat 13449549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 18560857 - 18560816
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  18560857 tacttcgatagtttttagtacacttgctaaaatatctatcaa 18560816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 6603758 - 6603800
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||| |||||||||| |||||||||||||    
T  6603758 actacttcgatagtatttggtacacttgccaaaatatctatca 6603800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 23467053 - 23467012
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  23467053 tacttcgatagt-tttagtacacttgctaaaatatctatcaat 23467012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 37415205 - 37415167
Alignment:
Q  12 ttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  37415205 ttcgatagtatttagtacacttgctagaatatctatcaa 37415167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 4543107 - 4543140
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  4543107 actacttcgatagtatttagtacacttgctaaaa 4543140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 4547179 - 4547212
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  4547179 actacttcgatagtatttagtacacttgctaaaa 4547212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 22232434 - 22232394
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  22232434 tacttcgatagt-tttagtacacttgctaaaatatctatcaa 22232394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 22254305 - 22254345
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  22254305 tacttcgatagt-tttagtacacttgctaaaatatctatcaa 22254345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 45286881 - 45286848
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  45286881 actacttcgatagtatttagtacacttgctaaaa 45286848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 5826516 - 5826477
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  5826516 tacttcgatagt-tttagtacacttgctaaaatatctatca 5826477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 18560018 - 18559979
Alignment:
Q  10 acttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  18560018 acttcgatagtttttagtacatttgctaaaatatctatca 18559979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 26557813 - 26557856
Alignment:
Q  9 tacttcgata-gtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  26557813 tacttcgatacgtttttagtacacttgctaaaatatctatcaat 26557856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 260
Target Start/End: Original strand, 28886306 - 28886412
Alignment:
Q  154 gtgtttaatgacattgacaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaaagattacaaagaaggatcactagagatcaaagatt 253  Q
    |||||| |||| ||||| || || ||| | || |||||||||||||| ||||||||||||   ||||| | ||||||||| |||||||| | |||||  |    
T  28886306 gtgtttgatgatattgaaaatcttacagaagagaaaatagatgaggtactaaaagagtttatcaaagacttcaaagaaggttcactagaaaacaaagggt 28886405  T
Q  254 ggccaac 260  Q
    |||||||    
T  28886406 ggccaac 28886412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 13842943 - 13842983
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatc 48  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  13842943 actacttcgatagt-tttggtacacttgctaaaatatctatc 13842983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 37415235 - 37415206
Alignment:
Q  7 actacttcgatagtatttagtacacttgct 36  Q
    ||||||||||||||||||||||||||||||    
T  37415235 actacttcgatagtatttagtacacttgct 37415206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 45290292 - 45290259
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    |||||| |||||||||||||||||||||||||||    
T  45290292 actactacgatagtatttagtacacttgctaaaa 45290259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 11825163 - 11825124
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  11825163 tacttcgatagt-tttagtacacttgctaaaatatttatca 11825124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 28111371 - 28111415
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28111371 actacttcgatagtatttagtacacttgctaaaatatctatcaat 28111415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 23021729 - 23021687
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23021729 actacttcgatagtatttagtacacttgctaaaatatctatca 23021687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 27536340 - 27536298
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27536340 actacttcgatagtatttagtacacttgctaaaatatctatca 27536298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 2794542 - 2794584
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  2794542 actacttcgatagtatttagtacacttgctaaaagatctatca 2794584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 20448147 - 20448189
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  20448147 actacttcgatagtatttagtacacttgctaaagtatctatca 20448189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 20533914 - 20533956
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  20533914 actacttcgatagtatttagtacacttgctaaagtatctatca 20533956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 49498310 - 49498268
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  49498310 actacttcgacagtatttagtacgcttgctaaaatatctatca 49498268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 1950255 - 1950222
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  1950255 actacttcgatagtatttagtacacttgctaaaa 1950222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 45960554 - 45960511
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||    
T  45960554 actacttcgatagtatttggtacacttgccaaaatttctatcaa 45960511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 31205152 - 31205194
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||| ||||||||| |||||||||| |||||||||||||    
T  31205152 actacttcaatagtatttggtacacttgccaaaatatctatca 31205194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 37183673 - 37183631
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||| | |||||||||| |||||||||||||    
T  37183673 actacttcgatagtatatggtacacttgccaaaatatctatca 37183631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0962 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 3090 - 3047
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3090 actacttcgatagtatttagtacacttgctaaaatatctatcaa 3047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 293332 - 293375
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  293332 actacttcgatagtatttagtacacttgctaaaatatctatcaa 293375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 18911819 - 18911862
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18911819 actacttcgatagtatttagtacacttgctaaaatatctatcaa 18911862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 34319726 - 34319684
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34319726 actacttcgatagtatttagtacacttgctaaaatatctatca 34319684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 15445161 - 15445120
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatc 48  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15445161 actacttcgatagtatttagtacacttgctaaaatatctatc 15445120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 34017592 - 34017549
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  34017592 actacttcgatagtatttaatacacttgctaaaatatctatcaa 34017549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 5673208 - 5673250
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  5673208 actacttcgataatatttagtacacttgctaaaatatctatca 5673250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 12238572 - 12238614
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  12238572 actacttcgatggtatttagtacacttgctaaaatatctatca 12238614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 40902882 - 40902840
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  40902882 actacttcgatagtatttagtacacttgctaaaatatttatca 40902840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 27676854 - 27676811
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||| |||||||||||||||||| ||||||||||||    
T  27676854 actacttcgataatatttagtacacttgctagaatatctatcaa 27676811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 52530742 - 52530700
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  52530742 actacttcgatagtatttggtacgcttgctaaaatatctatca 52530700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 44808764 - 44808731
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  44808764 actacttcgatagtatttagtacacttgctaaaa 44808731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 48637820 - 48637853
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  48637820 actacttcgatagtatttagtacacttgctaaaa 48637853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 15429652 - 15429608
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||    
T  15429652 actacttcgatagtatttaatacgcttgctaaaatgtctatcaat 15429608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 15436266 - 15436222
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||    
T  15436266 actacttcgatagtatttaatacgcttgctaaaatgtctatcaat 15436222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 17670623 - 17670662
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  17670623 tacttcgatagt-tttagtacacttgctaaaatatctatca 17670662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 27014575 - 27014617
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||||||| ||||||||| |||||||||||| ||||||||    
T  27014575 actacttcgatggtatttagtgcacttgctaaaaaatctatca 27014617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 29325136 - 29325178
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||| |||||||||| ||||||| |||||    
T  29325136 actacttcgatagtatttggtacacttgccaaaatatttatca 29325178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 40616615 - 40616573
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||| |||||||||| ||||||| |||||    
T  40616615 actacttcgatagtatttggtacacttgccaaaatatttatca 40616573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 44165120 - 44165150
Alignment:
Q  22 tttagtacacttgctaaaatatctatcaatc 52  Q
    |||||||||||||||||||||||||||||||    
T  44165120 tttagtacacttgctaaaatatctatcaatc 44165150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 12786453 - 12786481
Alignment:
Q  22 tttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||||||||||    
T  12786453 tttagtacacttgctaaaatatctatcaa 12786481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 15432397 - 15432437
Alignment:
Q  10 acttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||| ||||| ||||||||||||||| |||||||||    
T  15432397 acttcgataatattttgtacacttgctaaaaaatctatcaa 15432437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 24150987 - 24151030
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||    
T  24150987 actacttcgatagtatttggtacacttgccaaaa-atctatcaat 24151030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 25962373 - 25962416
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||    
T  25962373 actacttcgatagtatttggtacacttgccaaaat-tctatcaat 25962416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 35510322 - 35510350
Alignment:
Q  22 tttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||||||||||    
T  35510322 tttagtacacttgctaaaatatctatcaa 35510350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 38283288 - 38283245
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||    
T  38283288 actacttcgatagtatttggtacacttgccaaaa-atctatcaat 38283245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 52006312 - 52006284
Alignment:
Q  22 tttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||||||||||    
T  52006312 tttagtacacttgctaaaatatctatcaa 52006284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 25959499 - 25959456
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25959499 actacttcgatagtatttagtacacttgctaaaatatctatcaa 25959456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 30274578 - 30274535
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30274578 actacttcgatagtatttagtacacttgctaaaatatctatcaa 30274535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 8888931 - 8888973
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8888931 actacttcgatagtatttagtacacttgctaaaatatctatca 8888973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 11347704 - 11347660
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  11347704 actactttgatagtatttagtacacttgctaaaatatctatcaat 11347660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 25871079 - 25871122
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  25871079 actacttcgatagtatttagtacacttgctaaattatctatcaa 25871122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 25874476 - 25874516
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctat 47  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  25874476 actacttcgatagtatttagtacacttgctaaattatctat 25874516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 33310961 - 33311004
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  33310961 actacttcgatagtatttggtacacttgccaaaatatctatcaa 33311004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 24238667 - 24238700
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  24238667 actacttcgatagtatttagtacacttgctaaaa 24238700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 42368507 - 42368466
Alignment:
Q  9 tacttcgatagtatttagtacacttgct-aaaatatctatca 49  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  42368507 tacttcgatagtatttagtacacttgctaaaaatatctatca 42368466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 45499168 - 45499135
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  45499168 actacttcgatagtatttagtacacttgctaaaa 45499135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 10601148 - 10601191
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||| |||||||||| ||||||| ||||||    
T  10601148 actacttcgatagtatttggtacacttgccaaaatatttatcaa 10601191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 29440790 - 29440821
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaa 38  Q
    ||||||||||||||||||||||||||||||||    
T  29440790 actacttcgatagtatttagtacacttgctaa 29440821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 25138719 - 25138690
Alignment:
Q  22 tttagtacacttgctaaaatatctatcaat 51  Q
    ||||||||||||||||||||||||||||||    
T  25138719 tttagtacacttgctaaaatatctatcaat 25138690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 25820635 - 25820606
Alignment:
Q  22 tttagtacacttgctaaaatatctatcaat 51  Q
    ||||||||||||||||||||||||||||||    
T  25820635 tttagtacacttgctaaaatatctatcaat 25820606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 43207692 - 43207651
Alignment:
Q  9 tacttcgata-gtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||| || ||||||||||||||||||||||||||||    
T  43207692 tacttcgatacgtttttagtacacttgctaaaatatctatca 43207651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 1125544 - 1125502
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1125544 actacttcgatagtatttagtacacttgctaaaatatctatca 1125502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 9954277 - 9954319
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9954277 actacttcgatagtatttagtacacttgctaaaatatctatca 9954319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 30655774 - 30655816
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30655774 tacttcgatagtatttagtacacttgctaaaatatctatcaat 30655816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 26942242 - 26942200
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  26942242 actacttcgatagtatttagtacacttgctaaaat-tctatcaa 26942200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 34502661 - 34502702
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  34502661 actacttcgatagt-tttagtacacttgctaaaatatctatca 34502702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 23008376 - 23008409
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  23008376 actacttcgatagtatttagtacacttgctaaaa 23008409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 23779988 - 23779955
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  23779988 actacttcgatagtatttagtacacttgctaaaa 23779955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 5737871 - 5737827
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaat-atctatcaa 50  Q
    |||||||||||||||||||||||||||| |||||| |||||||||    
T  5737871 actacttcgatagtatttagtacacttgataaaataatctatcaa 5737827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 11188006 - 11187963
Alignment:
Q  7 actacttcgatagtatttagtacacttgct-aaaatatctatca 49  Q
    ||||||||||||||||||||| |||||||| |||||||||||||    
T  11188006 actacttcgatagtatttagtgcacttgctaaaaatatctatca 11187963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 23381977 - 23381946
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||    
T  23381977 tacttcgatagtatttagtacacttgctaaaa 23381946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 23384557 - 23384526
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||    
T  23384557 tacttcgatagtatttagtacacttgctaaaa 23384526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 3596588 - 3596555
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    |||||||||||||||||||||| |||||||||||    
T  3596588 actacttcgatagtatttagtaaacttgctaaaa 3596555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 24155172 - 24155139
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    |||||||||||||||||| |||||||||||||||    
T  24155172 actacttcgatagtatttggtacacttgctaaaa 24155139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 11192387 - 11192348
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  11192387 tacttcgatagtttttagtacacttgct-aaatatctatca 11192348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 2873963 - 2874005
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2873963 actacttcgatagtatttagtacacttgctaaaatatctatca 2874005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 35412904 - 35412946
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35412904 actacttcgatagtatttagtacacttgctaaaatatctatca 35412946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 539225 - 539268
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  539225 actacttcgatagtatttagtatacttgctaaaatatctatcaa 539268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 11190925 - 11190968
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  11190925 actacttcgatagtatttagtacacttactaaaatatctatcaa 11190968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 28266333 - 28266372
Alignment:
Q  11 cttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28266333 cttcgatagtatttagtacacttgctaaaatatctatcaa 28266372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 22993490 - 22993450
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  22993490 tacttcgatagtttttagtacacttgctaaaatatctatca 22993450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 12541095 - 12541053
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  12541095 actacttcaatagtatttagtacacttgctacaatatctatca 12541053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 50461345 - 50461303
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||| |||||||||| |||||||||||||    
T  50461345 actacttcgatagtatttggtacacttgccaaaatatctatca 50461303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 54724140 - 54724178
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatct 45  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  54724140 actacttcgataatatttagtacacttgctaaaatatct 54724178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 7486972 - 7487013
Alignment:
Q  9 tacttcgatagtatttagtacacttgct-aaaatatctatca 49  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  7486972 tacttcgatagtatttagtacacttgctaaaaatatctatca 7487013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 10106395 - 10106362
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  10106395 actacttcgatagtatttagtacacttgctaaaa 10106362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 16184478 - 16184445
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  16184478 actacttcgatagtatttagtacacttgctaaaa 16184445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 24125898 - 24125931
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  24125898 actacttcgatagtatttagtacacttgctaaaa 24125931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 24129175 - 24129208
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||||||||||||||||    
T  24129175 actacttcgatagtatttagtacacttgctaaaa 24129208  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 2784430 - 2784469
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  2784430 tacttcgatagt-tttagtacacttgctaaaatatctatca 2784469  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 6434567 - 6434527
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  6434567 tacttcgatagtatttagtgcacttgctaaaaaatctatca 6434527  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 8461289 - 8461257
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaa 39  Q
    |||||||||||||||||||||||||||||||||    
T  8461289 actacttcgatagtatttagtacacttgctaaa 8461257  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 30691134 - 30691178
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa-tatctatcaa 50  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  30691134 actacttcgatagtatttagtgcacttgctaaaattatctatcaa 30691178  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 18883534 - 18883575
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||| |||||| ||||||||||||||||||||||||||||    
T  18883534 actactttgatagt-tttagtacacttgctaaaatatctatca 18883575  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2775895 - 2775936
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||||||||  ||| |||||||||    
T  2775895 tacttcgatagtatttagtacacttgcacaaaaatctatcaa 2775936  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2779137 - 2779178
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||||||||  ||| |||||||||    
T  2779137 tacttcgatagtatttagtacacttgcacaaaaatctatcaa 2779178  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 6922919 - 6922952
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    |||||||||||||||||||||| |||||||||||    
T  6922919 actacttcgatagtatttagtatacttgctaaaa 6922952  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 10960215 - 10960255
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  10960215 tacttcgatagt-tttagtacgcttgctaaaatatctatcaa 10960255  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 10963722 - 10963762
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  10963722 tacttcgatagt-tttagtacgcttgctaaaatatctatcaa 10963762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 43927248 - 43927281
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||| ||||||||||||||||||||||||||    
T  43927248 actactttgatagtatttagtacacttgctaaaa 43927281  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 53816228 - 53816261
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    |||||| |||||||||||||||||||||||||||    
T  53816228 actactacgatagtatttagtacacttgctaaaa 53816261  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 23298393 - 23298365
Alignment:
Q  22 tttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||||||||||    
T  23298393 tttagtacacttgctaaaatatctatcaa 23298365  T

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Target: scaffold1785 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1785
Description:

Target: scaffold1785; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 229 - 271
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  229 actacttcgatagtatttagtacacttgctaaaaaatctatca 271  T

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Target: scaffold0690 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 7523 - 7481
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  7523 actacttcgatagtatttagtacacttgctaaaaaatctatca 7481  T

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Target: scaffold0035 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 62839 - 62881
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  62839 actacttcgatagtatttagtacacttgctaaaaaatctatca 62881  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 10664262 - 10664305
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  10664262 actacttcgatagtatttagtacacttgctaaaa-atctatcaat 10664305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 8911962 - 8912004
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  8911962 actacttcgatagtatttagtacacttgctaaaa-atctatcaa 8912004  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 16954086 - 16954128
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||| |||||||||| |||||||||||||    
T  16954086 actacttcgatagtatttggtacacttgccaaaatatctatca 16954128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 23597518 - 23597560
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  23597518 actacttcgatagtatttagtatacttgctaaaatatttatca 23597560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 18825697 - 18825653
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||    
T  18825697 actacttcgatagtatttggtacacttgccaaaaaatctatcaat 18825653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 5584241 - 5584211
Alignment:
Q  7 actacttcgatagtatttagtacacttgcta 37  Q
    |||||||||||||||||||||||||||||||    
T  5584241 actacttcgatagtatttagtacacttgcta 5584211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 14188482 - 14188523
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  14188482 tacttcgatagt-tttagtacacttgctaaaatatttatcaat 14188523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 25591285 - 25591243
Alignment:
Q  10 acttcgatagtatttagtacacttgct-aaaatatctatcaat 51  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    
T  25591285 acttcgataatatttagtacacttgctaaaaatatctatcaat 25591243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 20262866 - 20262905
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  20262866 tacttcgatagt-tttagtacacttgttaaaatatctatca 20262905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 21049496 - 21049535
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  21049496 tacttcgatagt-tttagtacacttgttaaaatatctatca 21049535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 3593 - 3554
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatc 48  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  3593 tacttcaatagtatttagtacacttgctaaaatatctatc 3554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 19710 - 19753
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  19710 actacttcgatagtatttggtacacttgccaaaatatctatcaa 19753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 7147 - 7106
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaat 51  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  7147 tacttcgatagt-tttagtacacttgctaaaatatctatcaat 7106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 449 - 491
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    |||||||| ||||||||| |||||||||| |||||||||||||    
T  449 actacttcaatagtatttggtacacttgccaaaatatctatca 491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 5208 - 5166
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaatatctatca 49  Q
    ||||||||||| ||||||||| |||||||||||| ||||||||    
T  5208 actacttcgatggtatttagtgcacttgctaaaaaatctatca 5166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 118252 - 118214
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctat 47  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  118252 tacttcgatagtttttagtacacttgttaaaatatctat 118214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1208 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1208
Description:

Target: scaffold1208; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 497 - 530
Alignment:
Q  7 actacttcgatagtatttagtacacttgctaaaa 40  Q
    ||||||||||||||||||||| ||||||||||||    
T  497 actacttcgatagtatttagtgcacttgctaaaa 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 20378 - 20418
Alignment:
Q  9 tacttcgatagtatttagtacacttgctaaaatatctatcaa 50  Q
    ||||||| |||| |||||||||||||||||||||||||||||    
T  20378 tacttcggtagt-tttagtacacttgctaaaatatctatcaa 20418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 198485 - 198517
Alignment:
Q  22 tttagtacacttgctaaaatatctatcaatcat 54  Q
    |||||||||||||||||||||||||||| ||||    
T  198485 tttagtacacttgctaaaatatctatcattcat 198517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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