View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_low_4 (Length: 678)

Name: NF5294_low_4
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_low_4
NF5294_low_4
[»] chr3 (1 HSPs)
chr3 (1-666)||(47288571-47289241)
[»] chr2 (1 HSPs)
chr2 (472-559)||(11193409-11193496)


Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 666
Target Start/End: Complemental strand, 47289241 - 47288571
Alignment:
Q  1 tgttaatttttgttcatatctctctcttaagtgcaaaggaacaacgcacaacacataagttatttacaacagaatatcgatggttaagaaagaccaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||    
T  47289241 tgttaatttttgttcatatctctctcttaagtgcaaaggaacaacgcacaacacataagttatttacaatagaatatcgatagttaagaaagatcaaaag 47289142  T
Q  101 ctaagaaactaatcccaaatacatggcaagattagttcaccaatgattaagatcaaaacccta-------tcaaaagctaaggaactaatcccaaaaaca 193  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |    
T  47289141 ctaagaaactaatctcaaatacatggcaagattagttcaccaatgattaagatcaaaaccctaaaccctatcaaaagctaaggaactaatcccaaaaata 47289042  T
Q  194 tgataagattagtccatgattaagatcaaaagatacgtttnnnnnnngatcaagagataaactatgatcnnnnnnnnctctttaaatcaccaacaacaaa 293  Q
    ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||        |||||||||||||||||||||||    
T  47289041 tgataagattagtccatgattaagatcaaaagatacgtttaaaaaaagatcaagagataaactatgatcttttttttctctttaaatcaccaacaacaaa 47288942  T
Q  294 atgataaccatttaactatctcaaaaaattgttcgatgactccgccttttgctgaaaacaatgttaattttcttctttcgagatggcacttagagaagct 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47288941 atgataaccatttaactatctcaaaaaattgttcgatgactccgccttttgctgaaaacaatgttaattttcttctttcgagatgacacttagagaagct 47288842  T
Q  394 agctaaattatatggaggtaataacaatttatttttaagaacccgcctaaggcgctaaagtacttcaaatttgccgccaaatgggaaggatttactgatt 493  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47288841 agctaaattatatgtaggtaataacaaattatttttaagaacccgcctaaggcgctaaagtacttcaaatttgccgccaaatgggaaggaattactgatt 47288742  T
Q  494 aaatacttacccattgcttaacaattatgcagatgatcccaaacacatcacatcccaaaaataaatgattcatactttcttgtaaaccccgaccgatgaa 593  Q
     ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47288741 gaatacttacccattgctt--caattatgcagatgatcccaaacacatcacatcccaaaaataaatgattcatactttcttgtaaaccccgaccaatgaa 47288644  T
Q  594 cacacacattcaatgtttctggaataattccaagcttctcccccaatcttccaggctaaagcatacatctctg 666  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47288643 cacacacattcaatgtttctggaataattccaagcttctcccccaatcttccaggctaaagcatacatctctg 47288571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 559
Target Start/End: Original strand, 11193409 - 11193496
Alignment:
Q  472 aaatgggaaggatttactgattaaatacttacccattgcttaacaattatgcagatgatcccaaacacatcacatcccaaaaataaat 559  Q
    |||||||||||||||||||||| ||||   |  ||||||||||| | ||| || ||| ||| |||||| |||||| ||||||||||||    
T  11193409 aaatgggaaggatttactgattgaatatcaagtcattgcttaaccaatattcaaatgctccaaaacacgtcacattccaaaaataaat 11193496  T

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