View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_40 (Length: 271)
Name: NF5294_low_40
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 10922706 - 10922557
Alignment:
| Q |
106 |
ataacattaacacatagaaaacacttataataagacattcatgttacgatcactgcaatgaacgtggccggctttgatttaacgaggnnnnnnntgccgg |
205 |
Q |
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| T |
10922706 |
ataacattaacacatagaaaacacttataataagacattcatgttacgatcactgcaatgaacgtggccggctttgatttaacgagg-aaaaaatgcccg |
10922608 |
T |
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| Q |
206 |
catatctcaatctatggttttgtttgaatccttgtaaagcttttcttgcac |
256 |
Q |
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| T |
10922607 |
catatctcaatctatagttttgtttgaatccttgtaaagcttttcttgcac |
10922557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 10935283 - 10935174
Alignment:
| Q |
1 |
gaaagttggaatagctcccattgtagaaaatatgctagtgttttgttt-aggtgatttagacatgaaggaaatatttgtagaagcatatgtaatctttaa |
99 |
Q |
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| T |
10935283 |
gaaagttggaatagctcccattgtagaaaagatgctagtgttttgttttaggtgatttagacatgaaggaaatatttgtagaagcatatgtaatctttaa |
10935184 |
T |
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| Q |
100 |
aatgttataa |
109 |
Q |
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| T |
10935183 |
aatgttataa |
10935174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 10959778 - 10959734
Alignment:
| Q |
46 |
tttaggtgatttagacatgaaggaaatatttgtagaagcatatgt |
90 |
Q |
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| T |
10959778 |
tttaggtgatttatacatgtaggaaagacttgtagaagcatatgt |
10959734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 45407654 - 45407596
Alignment:
| Q |
125 |
aacacttataataagacattcatgttacgatcactgcaatgaacgtggccggctttgat |
183 |
Q |
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| T |
45407654 |
aacacttataataagacattcatgttacgattactgcaatgaacatggccggctttgat |
45407596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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