View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5294_low_43 (Length: 259)

Name: NF5294_low_43
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5294_low_43
NF5294_low_43
[»] chr6 (1 HSPs)
chr6 (14-242)||(10116348-10116576)
[»] chr3 (1 HSPs)
chr3 (54-239)||(45810121-45810306)
[»] chr7 (2 HSPs)
chr7 (54-210)||(12105559-12105715)
chr7 (57-156)||(1445672-1445771)
[»] chr2 (7 HSPs)
chr2 (55-242)||(965079-965272)
chr2 (54-192)||(1403803-1403941)
chr2 (54-242)||(410497-410685)
chr2 (29-242)||(821353-821570)
chr2 (54-192)||(1400082-1400220)
chr2 (132-242)||(973727-973837)
chr2 (136-176)||(957801-957841)
[»] chr1 (1 HSPs)
chr1 (57-112)||(48675098-48675153)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 10116348 - 10116576
Alignment:
Q  14 cagagaaactaaggctacttacataatcatatatgtttttaattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctatttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116348 cagagaaactaaggctacttacataatcatatatgtttttaattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctatttt 10116447  T
Q  114 agagcgtttcccgcaacaccagattgacatagtttctaaaactctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaa 213  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116448 agaccgtttcccgcaacaccagattgacatagtttctaaaactctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaa 10116547  T
Q  214 aattcaaattcccgcatagtacaagttgt 242  Q
    |||||||||||||||||||||||||||||    
T  10116548 aattcaaattcccgcatagtacaagttgt 10116576  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 45810121 - 45810306
Alignment:
Q  54 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaa 153  Q
    ||||||||||| |||| ||| |||||||||||||||||| ||||| | | ||||||||||||| ||||| | ||  ||||| |||| |||||||||||||    
T  45810121 aattgaaagttgacattttgcagaagcccttggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgtcatagtttctaaa 45810220  T
Q  154 actctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagt 239  Q
    ||| | |||||||  ||||||||||| |||| |||||  |||| ||  |||| ||||| |||| |||| ||||||||||| |||||    
T  45810221 acttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagt 45810306  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 12105715 - 12105559
Alignment:
Q  54 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaa 153  Q
    ||||||||||| |||||||| |||||| |||| ||| |||| |||   ||||||||||| |||  |||||||| | ||||||||||||||| ||||||||    
T  12105715 aattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttctaaa 12105616  T
Q  154 actctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcct 210  Q
    ||| | | |||||  ||||||||  | |||| |||||||||||||| ||||||||||    
T  12105615 actgttgaattcttcagaataaattttgctaacataatgtgataactctgtaggcct 12105559  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 1445672 - 1445771
Alignment:
Q  57 tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaaact 156  Q
    ||||| ||||||||||| ||||||||||| |||||||| ||   |||||||||| | ||| ||||| | | | ||||| |||||||||||||||||||||    
T  1445672 tgaaaatttacatgttgcagaagcccttgaacatgaggttagttctctttctatctcagatcgttttctgaagcaccaaattgacatagtttctaaaact 1445771  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 965079 - 965272
Alignment:
Q  55 attgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattt------tagagcgtttcccgcaacaccagattgacatagttt 148  Q
    ||||| |||| ||||| ||||||||||||  ||||||| ||||| |||||||||| ||      |||| | ||||  | | ||||| |||||||||||||    
T  965079 attgagagttgacatgctgaagaagccctatgacatgatgataatactctttctaattctactttagaccctttcgtgtagcaccacattgacatagttt 965178  T
Q  149 ctaaaactctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagttgt 242  Q
    |||||||||| |||||||| |||||||| || |||||||||||||||| ||  ||| |||||| | || |||| |||| |||||| ||||||||    
T  965179 ctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgt 965272  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 1403941 - 1403803
Alignment:
Q  54 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaa 153  Q
    ||||| ||||| |||||||| ||| ||| |||||||||||||||| |||||||||  |||||  | | ||  | | ||||||||||||||||||||||||    
T  1403941 aattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgctttaggccatctcttgtagcaccagattgacatagtttctaaa 1403842  T
Q  154 actctcgcattctcaagaataaacctagctagcataatg 192  Q
    ||||| ||||| || ||||||||||| |||| |||||||    
T  1403841 actcttgcattatccagaataaaccttgctaacataatg 1403803  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 410685 - 410497
Alignment:
Q  54 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaa 153  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| | |||||||| ||||||  |||||  |   ||| |||| | |||||||  ||||    
T  410685 aattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaa 410586  T
Q  154 actctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagttgt 242  Q
    ||||| |||||||  ||||||||  | |||| |||||||||| ||   |||||||||| |||| | || ||||| ||||| ||||||||    
T  410585 actcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaagttgt 410497  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 821570 - 821353
Alignment:
Q  29 tacttacataatcatatatgtttttaat----tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcc 124  Q
    ||||||||||||| |||||||| | |||    |||||||| |||||||| |||||||||||| ||||  |||||    |||||||||| |||  ||||      
T  821570 tacttacataatcgtatatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgtttat 821471  T
Q  125 cgcaacaccagattgacatagtttctaaaactctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattc 224  Q
     |   | |||||||| ||||||||||||||||||||||||||  ||||||||  | |||| ||||||||||| ||| ||| |||||| || | |||| ||    
T  821470 tgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtc 821371  T
Q  225 ccgcatagtacaagttgt 242  Q
    ||||||||| ||||||||    
T  821370 ccgcatagtgcaagttgt 821353  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 1400220 - 1400082
Alignment:
Q  54 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagagcgtttcccgcaacaccagattgacatagtttctaaa 153  Q
    ||||||||||| |||||||  ||||||||||||||||||| |||| |||||||||  ||| |  | | ||  | | |||||||||| |||||||||||||    
T  1400220 aattgaaagttgacatgttacagaagcccttggacatgagaataatactctttctgctttgggccatctcatgtagcaccagattggcatagtttctaaa 1400121  T
Q  154 actctcgcattctcaagaataaacctagctagcataatg 192  Q
    ||||| |||||||  ||||||||||| |||| |||||||    
T  1400120 actcttgcattctgcagaataaaccttgctaacataatg 1400082  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 973727 - 973837
Alignment:
Q  132 ccagattgacatagtttctaaaactctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcata 231  Q
    |||||||  |||||||| ||||||||| || ||||| |||||||| || |||| ||||||||||| ||  ||| |||||| | || |||| |||| ||||    
T  973727 ccagattttcatagtttgtaaaactcttgcgttctccagaataaatcttgctaacataatgtgattacgttgttggcctgcatatgcaaagtcccacata 973826  T
Q  232 gtacaagttgt 242  Q
    || ||||||||    
T  973827 gtgcaagttgt 973837  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 957801 - 957841
Alignment:
Q  136 attgacatagtttctaaaactctcgcattctcaagaataaa 176  Q
    ||||||| |||||||||||||||||||||||  ||||||||    
T  957801 attgacaaagtttctaaaactctcgcattcttcagaataaa 957841  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 48675098 - 48675153
Alignment:
Q  57 tgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattt 112  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  | ||||||||||    
T  48675098 tgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctattt 48675153  T

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