View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_45 (Length: 254)
Name: NF5294_low_45
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_45 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 6333680 - 6333876
Alignment:
| Q |
19 |
cagagaaggttaatgttttagtagttactcagctgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgt |
118 |
Q |
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| T |
6333680 |
cagagaaggttaatgttttagtagttactcagctgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgcatttggaattgtaattgt |
6333779 |
T |
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| Q |
119 |
agcttctatttctgccattgttcttgaaactcaaattttgattgatacaacatattcttcaatattgattttcttatataatagttgagttttggaa |
215 |
Q |
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| T |
6333780 |
agctcctaattcagccattgttcttcaaactaaacttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaa |
6333876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 52 - 238
Target Start/End: Original strand, 6326233 - 6326416
Alignment:
| Q |
52 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgtagcttctatttctgccattgttcttgaaactca |
151 |
Q |
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| T |
6326233 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgtagcttctaattcagccattgttcgttaaactc- |
6326331 |
T |
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| Q |
152 |
aattttgattgatacaacatattcttcaatattgattttcttatataatagttgagttttggaatagaagaaaagacatggaaaaag |
238 |
Q |
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| T |
6326332 |
--ttttgatgagtacaacacattcttcaatattgcttttcttatagaagagttgagttttggaatagaagaaaagacatggaaaaag |
6326416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 6242565 - 6242427
Alignment:
| Q |
52 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgtagcttctatttctgccattgttcttgaaactca |
151 |
Q |
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| T |
6242565 |
tgaaaattgaagttatttaccttattgaatccgatgaagttcaagttcaagttgcatttggaattgtagctcctaattctgccgttgttcttcaaactta |
6242466 |
T |
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| Q |
152 |
aattttgattgatacaacatattcttcaatattgatttt |
190 |
Q |
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| T |
6242465 |
acttttgataagtacaacacattcttcaatattgctttt |
6242427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 6220991 - 6220902
Alignment:
| Q |
128 |
ttctgccattgttcttgaaactcaaattttgattgatacaacatattcttcaatattgattttcttatataatagttgagttttggaata |
217 |
Q |
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| T |
6220991 |
ttctgccattgttcttcaaactcaacttttgatgagtacaacacatgcttcaatattggtttacttatataatagttgatgtttggaata |
6220902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 778 - 643
Alignment:
| Q |
52 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgtagcttctatttctgccattgttcttgaaactca |
151 |
Q |
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| T |
778 |
tgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttg------catttggaattgtagctcctaattctgccattgttcttcaaactca |
685 |
T |
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| Q |
152 |
aattttgat--tga-tacaacatattcttcaatattgatttt |
190 |
Q |
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| T |
684 |
acttttgatgatgagtacaacacattcttcaatattgctttt |
643 |
T |
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