View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5294_low_49 (Length: 250)
Name: NF5294_low_49
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40801232 - 40800995
Alignment:
| Q |
1 |
aagttaccatgttgcaacagtgatgctaacttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaattactga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801232 |
aagttaccatgttgtaacagtgatgctaacttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaattactga |
40801133 |
T |
|
| Q |
101 |
tacataaccaccttttatgttaaaggaagtttgatatttattgagcatcaaacatacctgaaaacttcaaacatcttaaaaccatattttctaatatgta |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
40801132 |
tacgtaaccaccttttatgttaaaggaagttagatatttattgagcatcaaatatacttgaaaacttcaagcatctttaaaccatatttactaatatgta |
40801033 |
T |
|
| Q |
201 |
accatcttcctttcctcttcgtcgtttcctttcaccct |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40801032 |
accatcttcctttcctcttcgtcgtttcctttcaccct |
40800995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 18701745 - 18701846
Alignment:
| Q |
1 |
aagttaccatgttgcaacagtgatgctaacttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaattactga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18701745 |
aagttaccatgttgcaaaagtgatgctaacttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaattactga |
18701844 |
T |
|
| Q |
101 |
ta |
102 |
Q |
| |
|
|| |
|
|
| T |
18701845 |
ta |
18701846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 2248911 - 2248971
Alignment:
| Q |
94 |
ttactgatacataaccaccttttatgttaaaggaa-gtttgatatttattgagcatcaaac |
153 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
2248911 |
ttactgatacgtaaccacctttttcgttaaacgaaagttagatatttattgagcatcaaac |
2248971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14138476 - 14138413
Alignment:
| Q |
1 |
aagttaccatgttgcaacagtgatgctaacttaccaaatttggagaaatcaaataaaatattat |
64 |
Q |
| |
|
||||||||||| ||||||| ||| | |||| ||||||| |||||||||| |||||||| ||||| |
|
|
| T |
14138476 |
aagttaccatgctgcaacaatgaaggtaacataccaaagttggagaaattaaataaaagattat |
14138413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 9813743 - 9813683
Alignment:
| Q |
159 |
tgaaaacttcaaacatcttaaaaccatattttctaatatgtaaccatcttcctttcctctt |
219 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| | |||||||||| |||||||| ||||| |
|
|
| T |
9813743 |
tgaaaacttcaagcatcttcaaaccatatttattgatatgtaaccgccttccttttctctt |
9813683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University