View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_50 (Length: 250)
Name: NF5294_low_50
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42926320 - 42926561
Alignment:
| Q |
1 |
ctcgggtcacggcggcgagctttctcgccgggatgagaaaaaggacactccgtccagtcatgagacctgccacgtgcgcatcgccgaatcttgaactcga |
100 |
Q |
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| T |
42926320 |
ctcgggtcacggcggcgagctttctcgccgggatgagaaaaaggacactccgtccagtcatgagacctgccacgtgcgcatcgacgaatcttgaactcga |
42926419 |
T |
|
| Q |
101 |
acatgcggaaatgatcgttagaatacgaatccaccgattcatgagtcggaaaaatctccgagtcggaatcggagtcgttgttttcgttaacatagtgttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926420 |
acatgcggaaatgatcgttagaatacgaatccaccgattcatgagtcggaaaaatctccgagtcggaatcggagtcgttgttttcgttaacatagtgttg |
42926519 |
T |
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| Q |
201 |
aaaagcgcttagcgcttcttgcatgtagaactgagaataatc |
242 |
Q |
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| T |
42926520 |
aaaagcgcttagcgcttcttgcatgtagaactgagaataatc |
42926561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 34340273 - 34340157
Alignment:
| Q |
1 |
ctcgggtcacggcggcgagctttctcgccgggatgagaaaaaggacactccgtccagtcatgagacctgccacgtgcgcatcgccgaatcttgaactcga |
100 |
Q |
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||||| ||||||||||| ||||||||||||||||| | | |||||||||||||||||||| || || ||||||||||||| | |||||||||||| |
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| T |
34340273 |
ctcggatcacggcggcgtgctttctcgccgggatgtgcgtatggacactccgtccagtcatgtgatcttccacgtgcgcatcttcttatcttgaactcgt |
34340174 |
T |
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| Q |
101 |
acatgcggaaatgatcg |
117 |
Q |
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| T |
34340173 |
acatgcggaaatgatcg |
34340157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 47893873 - 47893776
Alignment:
| Q |
13 |
cggcgagctttctcgccgggatgagaaaaaggacactccgtccagtcatgagacctgccacgtgcgcatcgccgaatcttgaactcgaacatgcggaa |
110 |
Q |
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||||||||||| || ||||||||||| | ||||| |||||||||||||| ||||| |||||| |||| |||| |||||| |||||||| ||||| |
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| T |
47893873 |
cggcgagctttttcaccgggatgagagtatggacagtccgtccagtcatgggacctaccacgttggcattttcgaaccttgaattcgaacattcggaa |
47893776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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