View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_52 (Length: 243)
Name: NF5294_low_52
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_52 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 41 - 243
Target Start/End: Original strand, 7181163 - 7181362
Alignment:
| Q |
41 |
aaacatcgaaaaaggttaactctaatttgatatacaactatttgaaagaattggtaacatggtgaaacaaaattattttctcttcaaattccccatatat |
140 |
Q |
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| T |
7181163 |
aaacatcgaaaaaggttaactctaatttgatatacaacaatttgaaagatttggtaacatggtgaaacaaaattattttctcttcaaattccccatat-- |
7181260 |
T |
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| Q |
141 |
agaatagaaggggattgtagattctattaaaaccacttcttggaggtgattccttgctagag--nnnnnnnngaccttgtatatattttgaatggttttt |
238 |
Q |
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| T |
7181261 |
---atagaagggggttgtagattcgattaaaaccacttcttggaggtgattccttgctagagaaaaaaaaaagaccttgtatatattttgaatggttttt |
7181357 |
T |
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