View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_53 (Length: 242)
Name: NF5294_low_53
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 39125308 - 39125531
Alignment:
| Q |
1 |
cgagaatcttatcaagagacagcaatatgatgaatctgttagattcagtcgtccatataacttcagcaacgataatcaactagctgatctctttgaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39125308 |
cgagaatcttatcaagagacagcaatatgatgaagctgttagattcagtcgtgcatataacttcagcaacgataatcaactagctgatctctttgaagaa |
39125407 |
T |
|
| Q |
101 |
catgtgcagaatctaaaactaatttctgagagcaattgcaaggaaaccgactctattgaaattaaagttcttannnnnnncttttcttattcaatttcta |
200 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
39125408 |
catgtgca-aatctaaaactaatttctgagagcaattgcaaggaaaccgactctattgaaattaaagttcttatttttttcttatcttattcaatttcta |
39125506 |
T |
|
| Q |
201 |
tttatgaaacattccatcttcatac |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
39125507 |
tttatgaaacattccatcttcatac |
39125531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 39493095 - 39492933
Alignment:
| Q |
3 |
agaatcttatcaagagacagcaatatgatgaatctgttagattcagtcgtccatataacttcagcaacgataatcaactagctgatctctttgaagaaca |
102 |
Q |
| |
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|||||||||||||| || ||||||||||||| |||| |||||||| ||| ||||||||||||| || |||||||||||| |||||||||||||||||| |
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| T |
39493095 |
agaatcttatcaagcaacggcaatatgatgaagctgtcagattcagccgtgtatataacttcagcgacaataatcaactagttgatctctttgaagaaca |
39492996 |
T |
|
| Q |
103 |
tgtgcagaatctaaaactaatttctgagagcaattgcaaggaaaccgactctattgaaattaa |
165 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |
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| T |
39492995 |
tgtgcagaatctaaaactaatttctgagagcatttgcaaggaaaccaactccattgaaattaa |
39492933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 39469116 - 39469335
Alignment:
| Q |
2 |
gagaatcttatcaagagacagcaatatgatgaatctgttagattcagtcgtccatataacttcagcaacgataatcaactagctgatctctttgaagaac |
101 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||||| |||| | | ||||||||||||||| ||||||||||| |||||| || ||||| | |
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| T |
39469116 |
gagaatcttatcaagagacaagaatatgatgaagctgttagatttagtcatgcgtataacttcagcaacagtaatcaactagttgatctattcgaagagc |
39469215 |
T |
|
| Q |
102 |
atgtgcagaatctaaaactaatttctgagagcaattgcaaggaaaccgactctattgaaattaaagttcttannnnnnncttttcttattcaatttcta- |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
39469216 |
atgtgcagaatctaaaactaatttctgagagcatttgcaagggaaccaactccattgaaattaaggttctt-------tgttttcttattcaatttctat |
39469308 |
T |
|
| Q |
201 |
tttatgaaaca-ttccatcttcatact |
226 |
Q |
| |
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||||||||||| ||| ||||||||||| |
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| T |
39469309 |
tttatgaaacatttcaatcttcatact |
39469335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 39131307 - 39131476
Alignment:
| Q |
1 |
cgagaatcttatcaagagacagcaatatgatgaatctgttagattcagtcgtccatataacttcagcaacgataatcaactagctgatctctttgaagaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||| |||||||||||| ||||||||||||| || ||||||||||| || ||||||||||||| |
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| T |
39131307 |
cgagaatcttttcaagagacagcaatacgatgaagctgtcagattcagtcgtgtatataacttcagcgacaataatcaactatttggtctctttgaagaa |
39131406 |
T |
|
| Q |
101 |
catgtgcagaatctaaaactaatttctgagagcaattgcaaggaaaccgactctattgaaattaaagttc |
170 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | |||||||||||| |||| ||||||||||| |||| |
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| T |
39131407 |
catgtgcagaatctaaagctaatttctgagagtacttgcaaggaaactaactccattgaaattaaggttc |
39131476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 39145191 - 39145349
Alignment:
| Q |
7 |
tcttatcaagagacagcaatatgatgaatctgttagattcagtcgtccatataacttcagcaacgataatcaactagctgatctctttgaagaacatgtg |
106 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||| ||| |||| |||| ||||| ||||||||||| |
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| T |
39145191 |
tcttatcaagagacagcaatatgatgaagctgttagattcagttgtgcatataacttcagcaacaatactcagctagttgatatctttcaagaacatgtg |
39145290 |
T |
|
| Q |
107 |
cagaatctaaaactaatttctgagagcaattgcaaggaaaccgactctattgaaattaa |
165 |
Q |
| |
|
||||||||||| |||| | |||||||| |||||||||| || |||| ||||||||||| |
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|
| T |
39145291 |
cagaatctaaatttaatctttgagagcagttgcaaggaagccaactccattgaaattaa |
39145349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 165
Target Start/End: Complemental strand, 39188356 - 39188198
Alignment:
| Q |
7 |
tcttatcaagagacagcaatatgatgaatctgttagattcagtcgtccatataacttcagcaacgataatcaactagctgatctctttgaagaacatgtg |
106 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||| ||| ||| |||| |||| ||||| ||||||||||| |
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| T |
39188356 |
tcttatcaagaaacagcaatatgatgaagctgttagattcagttgtgcatataacttcagcaacaatactcagctagttgatatctttcaagaacatgtg |
39188257 |
T |
|
| Q |
107 |
cagaatctaaaactaatttctgagagcaattgcaaggaaaccgactctattgaaattaa |
165 |
Q |
| |
|
||||||||||| |||| | |||||||| |||||||||| || |||| ||||||||||| |
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|
| T |
39188256 |
cagaatctaaatttaatctttgagagcagttgcaaggaagccaactccattgaaattaa |
39188198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 39425297 - 39425098
Alignment:
| Q |
14 |
aagagacagcaatatgatgaatctgttagattcagtcgtccatataacttcagcaacgataatcaactagctgatctctttgaagaacatgtgcagaatc |
113 |
Q |
| |
|
|||||| | ||||||| |||| ||||| ||||||| || ||| |||||| |||||| |||||||| ||| ||||||||| |||||||||||||||| |
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|
| T |
39425297 |
aagagagaacaatatgttgaagctgtttcattcagttgtgcatttaacttgagcaacaataatcaattagttgatctcttgcgagaacatgtgcagaatg |
39425198 |
T |
|
| Q |
114 |
taaaactaatttctgagagcaattgcaaggaaaccgactctattgaaattaaagttcttannnnnnncttttcttattcaatttctatttatgaaacatt |
213 |
Q |
| |
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|||||| ||||||||||| | ||||| | ||||| |||| || |||||||| |||||| |||||||||||||||| | ||||||||||||| |
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| T |
39425197 |
caaaactgatttctgagagtacttgcatgaaaaccaactccatcgaaattaaggttctt--------tttttcttattcaatttat-tttatgaaacatt |
39425107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 39379575 - 39379514
Alignment:
| Q |
2 |
gagaatcttatcaagagacagcaatatgatgaatctgttagattcagtcgtccatataactt |
63 |
Q |
| |
|
||||||||||||||||| |||||| || || | |||||||||||||| || |||||||||| |
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|
| T |
39379575 |
gagaatcttatcaagaggaagcaatttgttgtagctgttagattcagttgtgcatataactt |
39379514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 39386366 - 39386309
Alignment:
| Q |
6 |
atcttatcaagagacagcaatatgatgaatctgttagattcagtcgtccatataactt |
63 |
Q |
| |
|
||||||||||||| |||||| || |||| |||||||||||||| || |||||||||| |
|
|
| T |
39386366 |
atcttatcaagaggaagcaatttgttgaagctgttagattcagttgtgcatataactt |
39386309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 39372230 - 39372390
Alignment:
| Q |
2 |
gagaatcttatcaagagacagcaatatgatgaatctgttagattcagtcgtccatataacttcagcaacgataatcaactagctgatctctttgaagaac |
101 |
Q |
| |
|
||||||||||| | ||| |||||| || || | |||||||||||| | | |||||||||| |||| | ||| |||||| ||||||||| |||||| |
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| T |
39372230 |
gagaatcttattaggaggaagcaatttgttgtagctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaac |
39372329 |
T |
|
| Q |
102 |
atgtgcagaatctaaaactaatttctgagagcaattgcaaggaaaccgactctattgaaat |
162 |
Q |
| |
|
| || |||||| ||||| |||| |||| ||| ||||||| ||||| |||| |||||||| |
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|
| T |
39372330 |
acgtccagaatgccaaactgatttgtgagggcagttgcaagaaaaccaactccattgaaat |
39372390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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