View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_56 (Length: 236)
Name: NF5294_low_56
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 18701527 - 18701415
Alignment:
| Q |
110 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
209 |
Q |
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| T |
18701527 |
aatctgcttattttgttctaaataatatttcagaaacacaataactcagagcgatatatagataccagagggaatattgtttcttaaggaatggcctgaa |
18701428 |
T |
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| Q |
210 |
acaaagtaataac |
222 |
Q |
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| T |
18701427 |
atagagtaataac |
18701415 |
T |
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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18701650 - 18701578
Alignment:
| Q |
1 |
agtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaagaatttaatt |
73 |
Q |
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| T |
18701650 |
agtaactgccattagctaagatacacagagaggtttcctaatagttttaaatgtatgctacaagaattcaatt |
18701578 |
T |
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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 40801327 - 40801409
Alignment:
| Q |
1 |
agtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaagaatttaattgtaacaaggg |
83 |
Q |
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| T |
40801327 |
agtaactgccatcaactaagatacacagagaggtttcttaatagttttaaatgtatgctacaagaatttaattgtaacaaggg |
40801409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 40801555 - 40801617
Alignment:
| Q |
160 |
gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacaaagtaataac |
222 |
Q |
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| T |
40801555 |
gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacagagtaataac |
40801617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 40801438 - 40801480
Alignment:
| Q |
41 |
atagttttaaatgtatgctacaagaatttaattgtaacaaggg |
83 |
Q |
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| T |
40801438 |
atagttttaaatgtatactacaagaatttaattgtaacaaggg |
40801480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 40801509 - 40801551
Alignment:
| Q |
41 |
atagttttaaatgtatgctacaagaatttaattgtaacaaggg |
83 |
Q |
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| T |
40801509 |
atagttttaaatgtatactacaagaatttaattgtaacaaggg |
40801551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 24866657 - 24866563
Alignment:
| Q |
110 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggc |
204 |
Q |
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| T |
24866657 |
aatcttcttattttattctaactaatatttcaaaaacacaataacttatagcaatatgtagatatgagagggattatggttttttgaggaatggc |
24866563 |
T |
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