View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5294_low_58 (Length: 235)
Name: NF5294_low_58
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_58 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 13653390 - 13653173
Alignment:
| Q |
18 |
cgagccttgtggatgaaataataacgtggttgggaggggataccttactaaagttggtcaaccaagtttctcggtggagagtagtcattgacataaccgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13653390 |
cgagccttgtggatgaaataataacgtggttgggaggggataccttactaaagttggtcaaccaagtttctcggtggagagtagtcattgacataaccgg |
13653291 |
T |
|
| Q |
118 |
tgtatactgcacactcacaacatggtcacccaaaaaggttgaataatatcttagagtatgggaataaaagcagaaatttgcaccgcttaattttagtatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13653290 |
tgtatactgcacactcacaacatggtcacccaaaaaggttgaataatatcttagaatatgggaataaaagcagaaatttgcaccacttaattttagtatc |
13653191 |
T |
|
| Q |
218 |
tgttgttgctactgcttc |
235 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13653190 |
tgttgttgctactgcttc |
13653173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 13712033 - 13711816
Alignment:
| Q |
18 |
cgagccttgtggatgaaataataacgtggttgggaggggataccttactaaagttggtcaaccaagtttctcggtggagagtagtcattgacataaccgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13712033 |
cgagccttgtggatgaaataataacgtggttgggaggggataccttactaaagttggtcaaccaagtttctcggtggagagtagtcattgacataaccgg |
13711934 |
T |
|
| Q |
118 |
tgtatactgcacactcacaacatggtcacccaaaaaggttgaataatatcttagagtatgggaataaaagcagaaatttgcaccgcttaattttagtatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13711933 |
tgtatactgcacactcacaacatggtcacccaaaaaggttgaataatatcttagaatatgggaataaaagcagaaatttgcaccacttaattttagtatc |
13711834 |
T |
|
| Q |
218 |
tgttgttgctactgcttc |
235 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13711833 |
tgttgttgctactgcttc |
13711816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University