View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_60 (Length: 228)
Name: NF5294_low_60
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 34665279 - 34665070
Alignment:
| Q |
1 |
aagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttggtacgactttctttgttacaatacaacctttttatagacttgtgactat |
100 |
Q |
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| T |
34665279 |
aagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttgatacgactttctttgttacaatacaacctttttatagacttgtgactat |
34665180 |
T |
|
| Q |
101 |
gagaatgtagatagactcttacataagaataaagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacggtaaaacatttat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665179 |
gagaatgtagatagactcttacataagaatagagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacggtaaaacatttat |
34665080 |
T |
|
| Q |
201 |
ccttctttat |
210 |
Q |
| |
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||||||||| |
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| T |
34665079 |
gcttctttat |
34665070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 34645585 - 34645366
Alignment:
| Q |
1 |
aagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttggtacgactttctttgttacaatacaacctttttatagactt---gtgac |
97 |
Q |
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|||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34645585 |
aagaaagagttagaaaggatagtgtgttcattgttgccatcacaaatttcggtacgactttctttgttacaatacaacctttttatagactttaattgac |
34645486 |
T |
|
| Q |
98 |
tatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgattat-------tcattcatcattcataaaggataaaaagaaaacggta |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||| |
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| T |
34645485 |
tatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgatcattcattcatcattcatcattcataatgggaaaaaagaaaacggta |
34645386 |
T |
|
| Q |
191 |
aaacatttatccttctttat |
210 |
Q |
| |
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||| |||||| ||||||||| |
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| T |
34645385 |
aaatatttatgcttctttat |
34645366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 45644696 - 45644613
Alignment:
| Q |
111 |
atagactcttacataagaataaagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacggtaaaac |
194 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
45644696 |
atagactcttacataagaatgtggcctgaaaatttgtgattattcattcatcattcataatggataaaaagaaaatggtaaaac |
45644613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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