View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5294_low_9 (Length: 551)
Name: NF5294_low_9
Description: NF5294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5294_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 2970478 - 2970967
Alignment:
| Q |
1 |
gttatttttgtgcaagtataataagcctctagcagctccaatagctactttgatcctttcttcccaagtaagaggtgatctagagtgttctgcatcaata |
100 |
Q |
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| T |
2970478 |
gttatttttgtgcaggtatagtaagcctctggcagctccaatagctactttgatcctatcttcccaagtaagaggtgatctagagtgttctgcatcaata |
2970577 |
T |
|
| Q |
101 |
atgtagaagtaagtctc--atattctttgtctaggacatattccatagtagaccacttcgacaggtagtccaccgaggaccgatactttgaaatcgtttg |
198 |
Q |
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| T |
2970578 |
atgtacaagtaagtctctcatattctttgtcgaaaagatattctacagcggaccactttgacaggtggtccaccgtgggccgatgcttt-atatcgtttg |
2970676 |
T |
|
| Q |
199 |
aaactccaaagacgacagtcgttggcttttgggagtagaagctcacagttctctttgttatcccaactgggacggt-atttgatccgtatcagtttgaca |
297 |
Q |
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||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2970677 |
aaactccaaagacgagagtcattggcttttggaagtagaagctcacagttctctttgttatcccaactgggacggcgatttgatccgtatcagtttgaca |
2970776 |
T |
|
| Q |
298 |
attataaggaaaaatgaatatgcgtgtctcaaaactcaactcatattcattttttcttgcttttgtcaaactgacgcagatcaggtcagtgtctcggctg |
397 |
Q |
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| T |
2970777 |
attataaggaaaaatgaatatgcgtgtctcaaaactcaactcatattcattttttcttgcttttgtcaaactgacgcagatcagggcagcgtctcggctg |
2970876 |
T |
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| Q |
398 |
taaggacaagaaggactgtaaacttctattcccaaaaggcattgttaatcgtcgttagactttcaagcgattttgaagtactgatcaacta |
488 |
Q |
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| T |
2970877 |
taaggacaagaaggactgtaaacttctattcccaaaaggcattgtcaatcgtcgttagggtttcaagtgatgttaaagtactgatcaacta |
2970967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 4095635 - 4095703
Alignment:
| Q |
303 |
aaggaaaaatgaatatgcgtgtctcaaaactcaactcatattcattttttcttgcttttgtcaaactga |
371 |
Q |
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| T |
4095635 |
aaggaaaaatgaatatgtgtgcctcaaaattcaactcatattcatttttcctcgtttttgtcaaactga |
4095703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 37977474 - 37977572
Alignment:
| Q |
315 |
atatgcgtgtctcaaaactcaactcatattcattttttcttgcttttgtcaaactgacgcagatcaggtcagtgtctcggctgtaaggacaagaaggac |
413 |
Q |
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| T |
37977474 |
atatgcgtggttcaaaactcaactcatatccgtttttccatgctttggtcaaattgacactgatcaagtcactgtctcaattgtaaggacaagaaggac |
37977572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Complemental strand, 11144913 - 11144866
Alignment:
| Q |
326 |
tcaaaactcaactcatattcattttttcttgcttttgtcaaactgacg |
373 |
Q |
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|||||||||||||||||||| ||||| ||| ||||||||||| ||||| |
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| T |
11144913 |
tcaaaactcaactcatattcgtttttccttccttttgtcaaattgacg |
11144866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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